Variant report

Variant	rs11761611
Chromosome Location	chr7:2719957-2719958
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:2716981..2718771-chr7:2719233..2721492,2	MCF-7	breast:
2	chr7:2593864..2596276-chr7:2719682..2722326,2	MCF-7	breast:
3	chr7:2607035..2607886-chr7:2719881..2720674,2	K562	blood:
4	chr7:2566390..2568846-chr7:2719086..2721333,2	MCF-7	breast:
5	chr7:2709663..2712637-chr7:2719830..2722193,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000264357	Chromatin interaction
ENSG00000106009	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11765487	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11772125	1.00[CHB][hapmap]
rs2049532	1.00[EUR][1000 genomes]
rs2906134	1.00[CHB][hapmap]
rs34650249	0.82[EUR][1000 genomes]
rs35297632	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs376048	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471227	chr7:2629020-2768864	Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv887302	chr7:2640141-2734713	Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv517403	chr7:2640141-2740015	Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv518027	chr7:2643607-2753667	Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	nsv887304	chr7:2653792-2727337	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv1015695	chr7:2654768-2754025	Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
7	nsv538651	chr7:2654768-2754025	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
8	nsv605864	chr7:2659951-2745124	Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	19 gene(s)	inside rSNPs	diseases
9	nsv605865	chr7:2662818-2748487	Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	19 gene(s)	inside rSNPs	diseases
10	nsv887307	chr7:2664214-2727337	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	17 gene(s)	inside rSNPs	diseases
11	nsv887308	chr7:2664214-2734713	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	19 gene(s)	inside rSNPs	diseases
12	nsv887309	chr7:2664214-2763102	Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
13	nsv887310	chr7:2669587-2734713	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	19 gene(s)	inside rSNPs	diseases
14	nsv464257	chr7:2669587-2745124	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	19 gene(s)	inside rSNPs	diseases
15	nsv605867	chr7:2669587-2745124	Weak transcription Genic enhancers Bivalent Enhancer Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	19 gene(s)	inside rSNPs	diseases
16	nsv605869	chr7:2672972-2752487	Weak transcription Strong transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	diseases
17	nsv887311	chr7:2673066-2734713	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	17 gene(s)	inside rSNPs	diseases
18	nsv464258	chr7:2705266-2745124	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
19	nsv605871	chr7:2705266-2745124	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
20	nsv887312	chr7:2707822-2763102	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
21	nsv966745	chr7:2711235-2722226	Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:2715400-2727400	Weak transcription	Right Atrium	heart
2	chr7:2718400-2720400	Enhancers	Fetal Intestine Large	intestine
3	chr7:2718400-2722200	Enhancers	Fetal Brain Male	brain
4	chr7:2718400-2722800	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr7:2718800-2720400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr7:2718800-2720600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr7:2719000-2720400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr7:2719000-2722800	Enhancers	Fetal Muscle Leg	muscle
9	chr7:2719200-2720200	Enhancers	Fetal Intestine Small	intestine
10	chr7:2719200-2721000	Enhancers	Liver	Liver
11	chr7:2719200-2727000	Weak transcription	Gastric	stomach
12	chr7:2719400-2720600	Flanking Active TSS	Brain Anterior Caudate	brain
13	chr7:2719400-2720800	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr7:2719400-2720800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
15	chr7:2719400-2723000	Enhancers	Brain Substantia Nigra	brain
16	chr7:2719600-2721000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr7:2719600-2722600	Enhancers	Brain Germinal Matrix	brain
18	chr7:2719600-2722600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
19	chr7:2719600-2722800	Enhancers	Brain Angular Gyrus	brain
20	chr7:2719800-2720200	Enhancers	Brain Cingulate Gyrus	brain
21	chr7:2719800-2720200	Active TSS	Fetal Brain Female	brain
22	chr7:2719800-2720400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr7:2719800-2721200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr7:2719800-2722800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr7:2719800-2722800	Enhancers	Brain Inferior Temporal Lobe	brain
26	chr7:2719800-2723000	Enhancers	Brain Hippocampus Middle	brain

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