Variant report

Variant	rs117624096
Chromosome Location	chr6:11319581-11319582
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11316228..11320319-chr6:11338551..11345302,8	MCF-7	breast:
2	chr6:11316054..11319968-chr6:11321343..11323554,3	MCF-7	breast:
3	chr6:11317456..11320211-chr6:11352421..11354286,2	MCF-7	breast:
4	chr6:11230020..11233936-chr6:11318712..11321243,5	MCF-7	breast:
5	chr6:11204929..11207313-chr6:11318207..11320828,2	MCF-7	breast:
6	chr6:11316359..11321416-chr6:11341732..11346793,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000111859	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	esv3439555	chr6:11317566-11322064	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3360064	chr6:11318366-11321264	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3352794	chr6:11318466-11322164	Weak transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11306400-11326800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr6:11310800-11319600	Weak transcription	Gastric	stomach
3	chr6:11310800-11323000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr6:11311000-11323800	Weak transcription	Fetal Thymus	thymus
5	chr6:11312200-11319600	Strong transcription	Primary T cells from cord blood	blood
6	chr6:11313800-11320200	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr6:11314600-11319600	Weak transcription	Fetal Brain Male	brain
8	chr6:11315000-11322800	Strong transcription	Primary B cells from cord blood	blood
9	chr6:11315200-11320000	Enhancers	HMEC	breast
10	chr6:11315400-11319800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr6:11315400-11320000	Enhancers	Fetal Intestine Small	intestine
12	chr6:11315800-11319800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:11315800-11320000	Enhancers	NH-A	brain
14	chr6:11315800-11320200	Enhancers	Fetal Intestine Large	intestine
15	chr6:11315800-11320200	Enhancers	Hela-S3	cervix
16	chr6:11316000-11321200	Weak transcription	Dnd41	blood
17	chr6:11316200-11329800	Weak transcription	Right Atrium	heart
18	chr6:11316400-11320200	Enhancers	NHEK	skin
19	chr6:11316800-11320000	Enhancers	HUVEC	blood vessel
20	chr6:11317000-11320200	Enhancers	NHDF-Ad	bronchial
21	chr6:11317400-11324600	Weak transcription	Thymus	Thymus
22	chr6:11317600-11319800	Enhancers	Stomach Mucosa	stomach
23	chr6:11317800-11319600	Enhancers	Duodenum Mucosa	Duodenum
24	chr6:11317800-11319800	Enhancers	Rectal Mucosa Donor 31	rectum
25	chr6:11317800-11319800	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr6:11317800-11320000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr6:11318000-11319800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr6:11318000-11319800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr6:11318000-11319800	Enhancers	Adipose Nuclei	Adipose
30	chr6:11318000-11319800	Enhancers	Colon Smooth Muscle	Colon
31	chr6:11318000-11319800	Enhancers	Fetal Muscle Leg	muscle
32	chr6:11318000-11320000	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
33	chr6:11318000-11320000	Enhancers	Monocytes-CD14+_RO01746	blood
34	chr6:11318000-11320000	Enhancers	NHLF	lung
35	chr6:11318000-11320200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
36	chr6:11318000-11320200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
37	chr6:11318200-11319600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr6:11318200-11319600	Enhancers	Cortex derived primary cultured neurospheres	brain
39	chr6:11318200-11319600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
40	chr6:11318200-11319600	Enhancers	Fetal Lung	lung
41	chr6:11318200-11319600	Enhancers	Left Ventricle	heart
42	chr6:11318200-11319800	Enhancers	Primary neutrophils fromperipheralblood	blood
43	chr6:11318200-11319800	Enhancers	Fetal Stomach	stomach
44	chr6:11318200-11319800	Enhancers	HSMM	muscle
45	chr6:11318200-11319800	Enhancers	HSMMtube	muscle
46	chr6:11318200-11320000	Enhancers	Sigmoid Colon	Sigmoid Colon
47	chr6:11318200-11320200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr6:11318200-11320400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
49	chr6:11318400-11319600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr6:11318400-11319600	Enhancers	Fetal Kidney	kidney

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links