Variant report

Variant	rs11762469
Chromosome Location	chr7:140614212-140614213
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:140606906..140609520-chr7:140613515..140616264,2	K562	blood:
2	chr7:140498910..140500950-chr7:140612218..140615111,2	K562	blood:
3	chr7:140612461..140615651-chr7:140623759..140625548,3	MCF-7	breast:
4	chr7:140609781..140612128-chr7:140612140..140615058,4	K562	blood:
5	chr7:140614023..140615840-chr7:140619443..140621784,2	MCF-7	breast:
6	chr7:140611711..140615434-chr7:140622283..140625319,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000157764	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10487888	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes]
rs13227429	0.81[CHB][hapmap];0.88[JPT][hapmap];0.84[EUR][1000 genomes]
rs35374337	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3829814	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9640168	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518139	chr7:140512661-140622355	Enhancers Weak transcription Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv1017980	chr7:140601863-140721368	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140593800-140623200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr7:140594000-140617200	Weak transcription	Lung	lung
3	chr7:140595800-140622400	Weak transcription	Aorta	Aorta
4	chr7:140597200-140623000	Weak transcription	Fetal Kidney	kidney
5	chr7:140599800-140622000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr7:140600000-140622000	Weak transcription	Brain Anterior Caudate	brain
7	chr7:140600800-140622600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr7:140603600-140615800	Weak transcription	Primary T cells from cord blood	blood
9	chr7:140604000-140622000	Weak transcription	Primary B cells from cord blood	blood
10	chr7:140604200-140623000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr7:140605000-140618800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr7:140606200-140618200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr7:140607200-140621800	Weak transcription	Dnd41	blood
14	chr7:140608600-140618000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr7:140608600-140618000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr7:140608600-140622000	Weak transcription	Adipose Nuclei	Adipose
17	chr7:140608800-140616000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr7:140609200-140623200	Weak transcription	Fetal Stomach	stomach
19	chr7:140609800-140616600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr7:140610600-140614400	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr7:140610600-140617000	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr7:140610800-140615600	Weak transcription	Ovary	ovary
23	chr7:140610800-140617000	Weak transcription	Left Ventricle	heart
24	chr7:140610800-140622600	Weak transcription	Right Atrium	heart
25	chr7:140610800-140623200	Weak transcription	Right Ventricle	heart
26	chr7:140611000-140615600	Weak transcription	Primary B cells from peripheral blood	blood
27	chr7:140611400-140614400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr7:140611800-140614400	Enhancers	Liver	Liver
29	chr7:140612000-140615600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr7:140612200-140614400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
31	chr7:140612200-140616000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr7:140612200-140623400	Weak transcription	Gastric	stomach
33	chr7:140612400-140614400	Enhancers	HUES64 Cell Line	embryonic stem cell
34	chr7:140612400-140614800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
35	chr7:140613000-140614400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr7:140613000-140615600	Weak transcription	Primary T helper cells fromperipheralblood	blood
37	chr7:140613000-140622000	Weak transcription	Small Intestine	intestine
38	chr7:140613000-140622400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr7:140613200-140614400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr7:140613200-140614400	Enhancers	iPS-20b Cell Line	embryonic stem cell
41	chr7:140613200-140615000	Weak transcription	Fetal Lung	lung
42	chr7:140613200-140615600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr7:140613200-140615600	Weak transcription	Spleen	Spleen
44	chr7:140613200-140617200	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr7:140613200-140618000	Weak transcription	Fetal Intestine Small	intestine
46	chr7:140613200-140618000	Weak transcription	Hela-S3	cervix
47	chr7:140613200-140622000	Weak transcription	Fetal Intestine Large	intestine
48	chr7:140613200-140623200	Weak transcription	Psoas Muscle	Psoas
49	chr7:140613600-140614600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr7:140613600-140615600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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