Variant report

Variant	rs11763025
Chromosome Location	chr7:21920165-21920166
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1128226	0.90[CHD][hapmap];0.91[JPT][hapmap]
rs11761264	1.00[ASW][hapmap];0.86[CHD][hapmap];0.91[MEX][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes]
rs11763022	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11763665	0.83[AMR][1000 genomes]
rs11763709	0.85[CHB][hapmap];0.91[JPT][hapmap];0.83[AMR][1000 genomes]
rs11766053	0.82[AMR][1000 genomes]
rs11769521	0.85[CHB][hapmap];0.91[JPT][hapmap];0.83[AMR][1000 genomes]
rs12540021	0.85[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap]
rs17361667	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4487645	0.87[MEX][hapmap];0.93[TSI][hapmap];0.85[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4636103	0.85[CHB][hapmap];0.83[JPT][hapmap]
rs56333627	0.80[ASN][1000 genomes]
rs57104699	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6948632	0.93[TSI][hapmap]
rs7971	0.85[CHB][hapmap];0.95[CHD][hapmap];0.91[JPT][hapmap];0.82[MEX][hapmap];0.86[TSI][hapmap]
rs886313	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018133	chr7:21740118-22055283	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv830922	chr7:21793386-21964675	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv1027453	chr7:21918474-21982448	Enhancers Flanking Active TSS Genic enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs11763025	FERD3L	cis	cerebellum	SCAN
rs11763025	TRA2A	cis	parietal	SCAN
rs11763025	CDCA7L	cis	multi-tissue	Pritchard
rs11763025	DNAH11	cis	cerebellum	SCAN

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21907400-21937200	Weak transcription	Fetal Thymus	thymus
2	chr7:21908400-21936600	Weak transcription	Primary T cells from cord blood	blood
3	chr7:21908800-21921200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr7:21910000-21939400	Weak transcription	Left Ventricle	heart
5	chr7:21910200-21925200	Weak transcription	Fetal Heart	heart
6	chr7:21910200-21925400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr7:21911200-21938400	Weak transcription	Stomach Smooth Muscle	stomach
8	chr7:21916400-21933800	Weak transcription	Thymus	Thymus
9	chr7:21916800-21927400	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr7:21916800-21935000	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr7:21916800-21936600	Weak transcription	Primary B cells from cord blood	blood
12	chr7:21917000-21925600	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr7:21917000-21936600	Weak transcription	Primary hematopoietic stem cells	blood
14	chr7:21917000-21938400	Weak transcription	Fetal Intestine Small	intestine
15	chr7:21917800-21926400	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr7:21920000-21920800	Enhancers	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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