Variant report

Variant	rs11763558
Chromosome Location	chr7:4789525-4789526
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:4788982..4795198-chr7:4795657..4801096,8	K562	blood:
2	chr7:4721334..4723717-chr7:4788278..4790771,3	MCF-7	breast:
3	chr7:4783269..4785885-chr7:4788147..4790015,2	K562	blood:
4	chr7:4720893..4723661-chr7:4788285..4791214,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164916	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10268723	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1053753	0.85[JPT][hapmap];0.96[ASN][1000 genomes]
rs11727	0.98[ASN][1000 genomes]
rs11763090	0.98[ASN][1000 genomes]
rs11978727	0.98[ASN][1000 genomes]
rs3750019	1.00[CHB][hapmap]
rs56101000	0.96[ASN][1000 genomes]
rs57494433	0.84[ASN][1000 genomes]
rs6463034	1.00[CHB][hapmap];0.85[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap]
rs73674088	0.93[AFR][1000 genomes]
rs73674090	1.00[ASN][1000 genomes]
rs73674092	0.98[ASN][1000 genomes]
rs7777890	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529538	chr7:4509189-5151503	Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
2	nsv530968	chr7:4572250-5418004	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
3	nsv1031697	chr7:4677463-5241790	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
4	nsv538704	chr7:4677463-5241790	Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
5	nsv887377	chr7:4730535-4862259	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
6	nsv887378	chr7:4730535-4929721	Weak transcription Flanking Active TSS Strong transcription Genic enhancers Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
7	nsv887379	chr7:4749527-4828593	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
8	nsv887380	chr7:4760124-4929721	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
9	nsv471293	chr7:4764861-4885221	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
10	nsv887381	chr7:4769030-4880954	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
11	nsv971482	chr7:4786671-4795436	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:4783400-4791000	Weak transcription	Gastric	stomach
2	chr7:4784200-4801400	Weak transcription	Small Intestine	intestine
3	chr7:4784600-4794400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:4784800-4793600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr7:4785200-4795000	Weak transcription	Psoas Muscle	Psoas
6	chr7:4785200-4814200	Weak transcription	Fetal Brain Male	brain
7	chr7:4785600-4814400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr7:4786000-4789600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr7:4786000-4789600	Enhancers	Placenta	Placenta
10	chr7:4786000-4789800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr7:4786000-4790000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr7:4786000-4790000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr7:4786000-4790200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr7:4786000-4791000	Weak transcription	Brain Cingulate Gyrus	brain
15	chr7:4786000-4793800	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr7:4786000-4794200	Weak transcription	Aorta	Aorta
17	chr7:4786000-4794400	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr7:4786200-4790000	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr7:4786200-4790000	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr7:4786200-4790200	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr7:4786400-4789600	Genic enhancers	Spleen	Spleen
22	chr7:4786400-4790000	Genic enhancers	Fetal Muscle Trunk	muscle
23	chr7:4786400-4808400	Strong transcription	Cortex derived primary cultured neurospheres	brain
24	chr7:4786600-4790000	Genic enhancers	Fetal Muscle Leg	muscle
25	chr7:4786600-4790800	Weak transcription	Brain Angular Gyrus	brain
26	chr7:4786600-4794200	Weak transcription	HMEC	breast
27	chr7:4786600-4794800	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr7:4786600-4798000	Weak transcription	NH-A	brain
29	chr7:4786600-4804400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr7:4786600-4809000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr7:4786800-4790000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr7:4786800-4790800	Genic enhancers	Primary T cells fromperipheralblood	blood
33	chr7:4786800-4791000	Weak transcription	Brain Anterior Caudate	brain
34	chr7:4786800-4793000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr7:4786800-4793000	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr7:4786800-4794200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr7:4786800-4794800	Weak transcription	Primary B cells from cord blood	blood
38	chr7:4786800-4796600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr7:4786800-4801600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr7:4786800-4807400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr7:4787000-4790200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr7:4787000-4791000	Weak transcription	Pancreas	Pancrea
43	chr7:4787000-4793200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr7:4787000-4794000	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr7:4787000-4794000	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr7:4787000-4797400	Weak transcription	NHDF-Ad	bronchial
47	chr7:4787000-4807600	Strong transcription	Dnd41	blood
48	chr7:4787200-4789600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr7:4787200-4789800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr7:4787200-4789800	Strong transcription	Brain Germinal Matrix	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links