Variant report

Variant	rs117635723
Chromosome Location	chr1:169897760-169897761
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:169896264..169898992-chr1:170499654..170502527,2	MCF-7	breast:
2	chr1:169897755..169898590-chr1:170734743..170735498,2	MCF-7	breast:
3	chr1:169897753..169898707-chr1:170850760..170851657,6	MCF-7	breast:
4	chr1:169819515..169822344-chr1:169896401..169898488,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000231407	Chromatin interaction
ENSG00000120370	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3451367	chr1:169630075-169976964	Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	esv1845220	chr1:169782006-169933886	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv1007190	chr1:169890542-169929582	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv997360	chr1:169892284-169946436	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1015110	chr1:169892661-169929582	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1013271	chr1:169892661-169960549	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv1010007	chr1:169895282-169946436	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1003588	chr1:169895984-169946436	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	esv2430109	chr1:169897656-169899010	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169876200-169903600	Weak transcription	Aorta	Aorta
2	chr1:169878400-169946200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr1:169881400-169901000	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr1:169884200-169913000	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr1:169884600-169900600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr1:169884600-169900600	Weak transcription	NHDF-Ad	bronchial
7	chr1:169885200-169900800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr1:169885400-169913200	Weak transcription	Ovary	ovary
9	chr1:169885600-169903200	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr1:169885800-169898000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr1:169886400-169913000	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr1:169886600-169915600	Weak transcription	Stomach Smooth Muscle	stomach
13	chr1:169887000-169911400	Weak transcription	Left Ventricle	heart
14	chr1:169888800-169900600	Weak transcription	Fetal Stomach	stomach
15	chr1:169889600-169900600	Weak transcription	Fetal Lung	lung
16	chr1:169889800-169898000	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr1:169890800-169906200	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr1:169891000-169898200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr1:169891000-169911400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr1:169891000-169913200	Weak transcription	Adipose Nuclei	Adipose
21	chr1:169894200-169903400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr1:169895600-169898000	Weak transcription	GM12878-XiMat	blood
23	chr1:169895600-169900600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr1:169895600-169901000	Weak transcription	Fetal Heart	heart
25	chr1:169896400-169898000	Weak transcription	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links