Variant report

Variant	rs117636590
Chromosome Location	chr14:55837255-55837256
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:55828992..55831981-chr14:55837033..55839790,2	MCF-7	breast:
2	chr14:55836452..55838141-chr14:55877105..55879990,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000126775	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039438	chr14:55746585-55886099	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv901957	chr14:55819219-55853724	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv901958	chr14:55822095-56045411	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv983957	chr14:55836658-55843320	Strong transcription Genic enhancers Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55801200-55842800	Weak transcription	Fetal Brain Male	brain
2	chr14:55808800-55865200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr14:55814400-55853200	Weak transcription	Right Atrium	heart
4	chr14:55818000-55841800	Weak transcription	Hela-S3	cervix
5	chr14:55818200-55842800	Weak transcription	Brain Angular Gyrus	brain
6	chr14:55818200-55877600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr14:55818400-55858800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr14:55818800-55842600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr14:55819200-55842800	Weak transcription	Rectal Smooth Muscle	rectum
10	chr14:55819400-55847800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr14:55819400-55850600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr14:55819400-55855200	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr14:55819800-55842200	Weak transcription	HSMM	muscle
14	chr14:55821200-55842800	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr14:55821400-55848800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr14:55821400-55849200	Weak transcription	Fetal Heart	heart
17	chr14:55821400-55865200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr14:55821800-55839800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr14:55821800-55840400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr14:55822200-55842800	Weak transcription	Brain Substantia Nigra	brain
21	chr14:55823200-55840600	Weak transcription	NHEK	skin
22	chr14:55823200-55848400	Weak transcription	HMEC	breast
23	chr14:55824000-55848400	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr14:55828200-55837400	Strong transcription	Fetal Muscle Trunk	muscle
25	chr14:55830400-55837400	Strong transcription	Primary T cells from cord blood	blood
26	chr14:55830800-55839000	Strong transcription	Fetal Muscle Leg	muscle
27	chr14:55831000-55859400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
28	chr14:55831800-55858000	Strong transcription	Primary monocytes fromperipheralblood	blood
29	chr14:55832000-55837400	Strong transcription	Fetal Thymus	thymus
30	chr14:55832000-55838200	Strong transcription	Primary T helper cells fromperipheralblood	blood
31	chr14:55832000-55839600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
32	chr14:55832000-55840600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr14:55832000-55849600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr14:55832000-55850800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr14:55832200-55837400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr14:55832200-55838000	Strong transcription	Brain Cingulate Gyrus	brain
37	chr14:55832400-55839200	Weak transcription	Colon Smooth Muscle	Colon
38	chr14:55832400-55857800	Strong transcription	Liver	Liver
39	chr14:55832600-55838800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr14:55832600-55840200	Weak transcription	Primary B cells from cord blood	blood
41	chr14:55832800-55842400	Weak transcription	Fetal Kidney	kidney
42	chr14:55832800-55842800	Weak transcription	Pancreas	Pancrea
43	chr14:55832800-55842800	Weak transcription	Psoas Muscle	Psoas
44	chr14:55832800-55842800	Weak transcription	HUVEC	blood vessel
45	chr14:55833000-55842200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr14:55833000-55845600	Weak transcription	Colonic Mucosa	Colon
47	chr14:55833600-55837400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr14:55833600-55837400	Strong transcription	Primary T helper cells PMA-I stimulated	--
49	chr14:55833800-55839200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
50	chr14:55834000-55838000	Strong transcription	Thymus	Thymus

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