Variant report

Variant	rs11764316
Chromosome Location	chr7:39811596-39811597
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11765134	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2108079	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6462941	1.00[CEU][hapmap]
rs6462944	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7810999	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427777	chr7:39726513-39936904	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv887973	chr7:39772654-40110720	Strong transcription Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
3	nsv970820	chr7:39797964-39839303	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv970988	chr7:39804754-39819869	Strong transcription Weak transcription Enhancers	TF binding region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv3348232	chr7:39810724-39822505	Weak transcription Strong transcription Genic enhancers	TF binding region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39776600-39820400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr7:39785000-39831800	Weak transcription	Primary B cells from cord blood	blood
3	chr7:39794000-39830800	Weak transcription	Pancreas	Pancrea
4	chr7:39794200-39820800	Weak transcription	Ovary	ovary
5	chr7:39794200-39837400	Weak transcription	Stomach Smooth Muscle	stomach
6	chr7:39794600-39830800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr7:39795400-39813000	Weak transcription	GM12878-XiMat	blood
8	chr7:39795400-39833400	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr7:39798000-39811800	Weak transcription	Fetal Muscle Trunk	muscle
10	chr7:39798200-39820800	Weak transcription	Esophagus	oesophagus
11	chr7:39798200-39831000	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr7:39798400-39830800	Weak transcription	Fetal Intestine Small	intestine
13	chr7:39799000-39821200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr7:39799800-39820400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr7:39801600-39820800	Weak transcription	Placenta	Placenta
16	chr7:39801600-39831600	Weak transcription	Gastric	stomach
17	chr7:39801600-39833600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr7:39801800-39831000	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr7:39801800-39831400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr7:39802000-39830800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr7:39802000-39835200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr7:39802200-39812000	Weak transcription	Fetal Intestine Large	intestine
23	chr7:39802600-39812400	Weak transcription	NH-A	brain
24	chr7:39802600-39820200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr7:39802600-39821200	Weak transcription	Adipose Nuclei	Adipose
26	chr7:39802600-39833000	Weak transcription	Dnd41	blood
27	chr7:39802800-39812400	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr7:39802800-39830800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr7:39802800-39835000	Weak transcription	Brain Hippocampus Middle	brain
30	chr7:39803000-39820400	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr7:39803000-39820800	Weak transcription	Fetal Muscle Leg	muscle
32	chr7:39803000-39824400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr7:39803400-39820200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr7:39803400-39832000	Weak transcription	Fetal Thymus	thymus
35	chr7:39803600-39820400	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr7:39805200-39834400	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr7:39805400-39821000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr7:39805400-39831000	Weak transcription	Fetal Brain Female	brain
39	chr7:39805600-39823400	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr7:39806000-39822800	Weak transcription	Primary T helper cells PMA-I stimulated	--
41	chr7:39806200-39820800	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr7:39806400-39814600	Weak transcription	Fetal Lung	lung
43	chr7:39807200-39812200	Strong transcription	Primary B cells from peripheral blood	blood
44	chr7:39807400-39830800	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr7:39807800-39820200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr7:39807800-39821200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr7:39807800-39830800	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr7:39807800-39830800	Weak transcription	Brain Cingulate Gyrus	brain
49	chr7:39807800-39830800	Weak transcription	Thymus	Thymus
50	chr7:39807800-39832800	Weak transcription	Brain Anterior Caudate	brain

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