Variant report

Variant	rs11765916
Chromosome Location	chr7:98049482-98049483
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:98028890..98030697-chr7:98047253..98049869,3	K562	blood:
2	chr7:97924308..97925809-chr7:98047597..98050461,2	K562	blood:
3	chr7:98026657..98030697-chr7:98046371..98049650,5	K562	blood:
4	chr7:98023816..98025610-chr7:98048649..98050466,2	MCF-7	breast:
5	chr7:97982647..97985378-chr7:98046935..98049753,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000006453	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7777035	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031371	chr7:97312452-98070538	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv831067	chr7:97860169-98065528	Bivalent Enhancer Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv888766	chr7:97975542-98123880	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
4	nsv607919	chr7:98021211-98124854	Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
5	nsv539034	chr7:98029119-98106260	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98031000-98050400	Weak transcription	Right Atrium	heart
2	chr7:98044200-98049600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr7:98046400-98050800	Enhancers	Pancreas	Pancrea
4	chr7:98046400-98050800	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr7:98046400-98050800	Enhancers	Stomach Mucosa	stomach
6	chr7:98047000-98050200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr7:98047200-98050200	Weak transcription	GM12878-XiMat	blood
8	chr7:98048200-98049600	Weak transcription	Colonic Mucosa	Colon
9	chr7:98048200-98050600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr7:98048400-98050200	Weak transcription	Spleen	Spleen
11	chr7:98048400-98050400	Weak transcription	Gastric	stomach
12	chr7:98048600-98050200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr7:98048600-98050200	Weak transcription	Fetal Intestine Small	intestine
14	chr7:98048800-98050200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr7:98048800-98050200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr7:98048800-98050200	Enhancers	A549	lung
17	chr7:98048800-98050200	Weak transcription	K562	blood
18	chr7:98048800-98050200	Weak transcription	NHDF-Ad	bronchial
19	chr7:98048800-98050400	Enhancers	Hela-S3	cervix
20	chr7:98049000-98050000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr7:98049000-98050000	Weak transcription	NHEK	skin
22	chr7:98049000-98050200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr7:98049000-98050200	Weak transcription	Fetal Intestine Large	intestine
24	chr7:98049000-98050200	Weak transcription	HSMM	muscle
25	chr7:98049200-98049600	Flanking Active TSS	HepG2	liver
26	chr7:98049200-98049800	Flanking Active TSS	Liver	Liver
27	chr7:98049200-98050200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr7:98049200-98050200	Weak transcription	HMEC	breast

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