Variant report

Variant	rs117660461
Chromosome Location	chr14:105286082-105286083
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:17)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:17 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr14:105285882-105286146	HCT-116	colon:	n/a	n/a
2	NR2F2	chr14:105285744-105286568	MCF-7	breast:	n/a	n/a
3	GATA3	chr14:105285837-105286358	MCF-7	breast:	n/a	n/a
4	POLR2A	chr14:105285343-105286173	K562	blood:	n/a	n/a
5	GATA3	chr14:105285505-105286705	MCF-7	breast:	n/a	n/a
6	POLR2A	chr14:105286001-105286136	MCF10A-Er-Src	breast:	n/a	n/a
7	MAX	chr14:105285448-105286435	MCF-7	breast:	n/a	n/a
8	GATA3	chr14:105286064-105286370	T-47D	breast:	n/a	n/a
9	POLR2A	chr14:105285362-105286302	Hela-S3	cervix:	n/a	n/a
10	NR2F2	chr14:105285592-105286547	MCF-7	breast:	n/a	n/a
11	GATA3	chr14:105285504-105286573	MCF-7	breast:	n/a	n/a
12	POLR2A	chr14:105283941-105288196	HepG2	liver:	n/a	n/a
13	POLR2A	chr14:105285285-105286503	SK-N-MC	brain:	n/a	n/a
14	GATA3	chr14:105286064-105286322	T-47D	breast:	n/a	n/a
15	GATA3	chr14:105286056-105286418	MCF-7	breast:	n/a	n/a
16	POLR2A	chr14:105285413-105286089	K562	blood:	n/a	n/a
17	HDAC2	chr14:105285637-105286520	MCF-7	breast:	n/a	n/a

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:105217398..105221846-chr14:105284355..105288810,4	MCF-7	breast:
2	chr14:105284603..105287527-chr14:105343615..105347092,3	MCF-7	breast:
3	chr14:105284508..105286639-chr14:105398983..105401312,2	MCF-7	breast:
4	chr14:105177553..105179620-chr14:105284148..105286152,2	K562	blood:
5	chr14:105259095..105269353-chr14:105280422..105289302,26	K562	blood:
6	chr14:105279760..105281975-chr14:105284516..105287260,2	K562	blood:
7	chr14:105285820..105287586-chr14:105330282..105332678,2	MCF-7	breast:
8	chr14:105189864..105192391-chr14:105285849..105287579,2	MCF-7	breast:

No data

Variant related genes	Relation type
LINC00638	TF binding region
ENSG00000142208	Chromatin interaction
ENSG00000179627	Chromatin interaction
ENSG00000184990	Chromatin interaction
ENSG00000185100	Chromatin interaction
ENSG00000203485	Chromatin interaction
ENSG00000099814	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:29 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530812	chr14:104775571-105364883	Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv1053591	chr14:105024558-105475931	Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
3	nsv542224	chr14:105024558-105475931	Bivalent Enhancer Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
4	esv2830002	chr14:105078251-105348552	Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
5	nsv902388	chr14:105092479-105311249	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
6	nsv902389	chr14:105092479-105366499	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
7	esv1828345	chr14:105100787-105803170	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
8	nsv470677	chr14:105126354-105348552	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
9	nsv542225	chr14:105133688-105803170	Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
10	nsv517038	chr14:105146579-105311249	Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
11	nsv566057	chr14:105146579-105311249	Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
12	nsv566060	chr14:105148655-105311249	Flanking Active TSS Genic enhancers Enhancers Bivalent Enhancer Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
13	nsv902404	chr14:105148655-105311249	Weak transcription Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
14	nsv902405	chr14:105148655-105340643	Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
15	nsv902409	chr14:105154105-105311249	Flanking Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
16	nsv566063	chr14:105154105-105312935	Weak transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
17	nsv542227	chr14:105157572-105803170	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	147 gene(s)	inside rSNPs	diseases
18	nsv902412	chr14:105238701-105361934	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
19	esv1836552	chr14:105246686-105348552	Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
20	nsv902413	chr14:105246686-105366499	Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
21	esv1833474	chr14:105268228-105332154	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
22	nsv566092	chr14:105274086-105286331	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	21 gene(s)	inside rSNPs	diseases
23	nsv566093	chr14:105274093-105321835	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
24	esv1840298	chr14:105274292-105366499	Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
25	nsv902416	chr14:105277209-105366499	Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
26	esv1803813	chr14:105285159-105293358	Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
27	nsv511540	chr14:105285159-105314093	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
28	nsv456456	chr14:105285159-105412541	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
29	nsv566099	chr14:105285159-105412541	Bivalent Enhancer Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:105283200-105287000	Weak transcription	Esophagus	oesophagus
2	chr14:105283200-105292200	Weak transcription	Gastric	stomach
3	chr14:105283400-105286800	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr14:105283400-105286800	Weak transcription	HSMMtube	muscle
5	chr14:105283400-105286800	Weak transcription	HUVEC	blood vessel
6	chr14:105283400-105286800	Weak transcription	NH-A	brain
7	chr14:105283400-105287000	Weak transcription	Ovary	ovary
8	chr14:105283400-105287000	Weak transcription	Right Ventricle	heart
9	chr14:105283400-105287000	Weak transcription	NHLF	lung
10	chr14:105283400-105287200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr14:105283400-105287200	Weak transcription	Brain Anterior Caudate	brain
12	chr14:105283400-105287200	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr14:105283400-105287200	Weak transcription	Stomach Mucosa	stomach
14	chr14:105283400-105287400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr14:105283400-105287400	Weak transcription	Duodenum Mucosa	Duodenum
16	chr14:105283400-105292000	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr14:105283400-105292000	Weak transcription	Right Atrium	heart
18	chr14:105283600-105286600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr14:105283600-105286800	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr14:105283600-105286800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr14:105283600-105286800	Weak transcription	HMEC	breast
22	chr14:105283600-105287000	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr14:105283600-105287000	Weak transcription	Brain Hippocampus Middle	brain
24	chr14:105283600-105287000	Weak transcription	NHEK	skin
25	chr14:105283600-105287200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr14:105283600-105287200	Weak transcription	Colonic Mucosa	Colon
27	chr14:105283600-105287200	Weak transcription	Fetal Brain Male	brain
28	chr14:105283600-105287600	Weak transcription	Brain Angular Gyrus	brain
29	chr14:105283600-105288800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr14:105283600-105292000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr14:105283600-105292000	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr14:105283800-105286800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr14:105283800-105287000	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr14:105283800-105287000	Weak transcription	HSMM	muscle
35	chr14:105283800-105292000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr14:105283800-105292200	Weak transcription	Brain Cingulate Gyrus	brain
37	chr14:105284000-105286800	Weak transcription	Liver	Liver
38	chr14:105284000-105287000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr14:105284000-105287000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr14:105284000-105287000	Weak transcription	Placenta	Placenta
41	chr14:105284000-105287000	Weak transcription	Left Ventricle	heart
42	chr14:105284000-105287000	Weak transcription	Stomach Smooth Muscle	stomach
43	chr14:105284000-105287400	Weak transcription	Rectal Smooth Muscle	rectum
44	chr14:105284000-105288000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr14:105284000-105288800	Weak transcription	Spleen	Spleen
46	chr14:105284000-105289400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr14:105284000-105292000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr14:105284200-105286600	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr14:105284200-105288200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr14:105284400-105286200	Weak transcription	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links