Variant report

Variant	rs11766287
Chromosome Location	chr7:71099812-71099813
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10245252	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10281339	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11766196	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3857700	0.87[ASN][1000 genomes]
rs3973922	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4719155	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55642996	0.84[EUR][1000 genomes]
rs56004422	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56355637	0.86[EUR][1000 genomes]
rs56385882	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs58633278	0.85[EUR][1000 genomes]
rs59026100	0.86[EUR][1000 genomes]
rs59591796	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60695418	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6460678	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67230637	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67565098	0.87[EUR][1000 genomes]
rs67899549	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6949744	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6970429	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6979843	0.87[EUR][1000 genomes]
rs73187168	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73187191	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73187195	0.80[EUR][1000 genomes]
rs7776521	0.88[EUR][1000 genomes]
rs7783628	0.81[EUR][1000 genomes]
rs7796230	0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs9638298	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1026896	chr7:71003462-71721516	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv516049	chr7:71026463-71280299	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1019799	chr7:71027947-71274161	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv538938	chr7:71027947-71274161	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1016182	chr7:71033825-71285800	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1034811	chr7:71033825-71288961	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1024288	chr7:71039619-71285800	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1027835	chr7:71055226-71281334	Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv538939	chr7:71055226-71281334	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv1026364	chr7:71055226-71287960	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv538940	chr7:71055226-71287960	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv948337	chr7:71057204-71277518	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:71096600-71101200	Weak transcription	Psoas Muscle	Psoas
2	chr7:71097400-71109800	Weak transcription	Aorta	Aorta
3	chr7:71098200-71100200	Enhancers	Fetal Intestine Large	intestine
4	chr7:71098800-71101200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr7:71098800-71101400	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr7:71099000-71100400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr7:71099000-71101000	Weak transcription	Brain Angular Gyrus	brain
8	chr7:71099000-71101200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr7:71099000-71101200	Weak transcription	Fetal Heart	heart
10	chr7:71099000-71101200	Weak transcription	Left Ventricle	heart
11	chr7:71099000-71101200	Weak transcription	Right Ventricle	heart
12	chr7:71099000-71101200	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr7:71099000-71102400	Weak transcription	Fetal Brain Male	brain
14	chr7:71099000-71102400	Weak transcription	Fetal Muscle Trunk	muscle
15	chr7:71099000-71102600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr7:71099000-71102600	Weak transcription	Brain Cingulate Gyrus	brain
17	chr7:71099000-71104200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr7:71099000-71104200	Weak transcription	Fetal Brain Female	brain
19	chr7:71099000-71114000	Weak transcription	Ovary	ovary
20	chr7:71099200-71100200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr7:71099200-71100400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr7:71099200-71100400	Weak transcription	HepG2	liver
23	chr7:71099200-71100600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr7:71099200-71101000	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr7:71099200-71101200	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr7:71099200-71101200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr7:71099200-71101200	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr7:71099200-71101200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr7:71099200-71101200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr7:71099200-71101200	Weak transcription	HSMMtube	muscle
31	chr7:71099200-71101200	Weak transcription	NH-A	brain
32	chr7:71099200-71101200	Weak transcription	NHLF	lung
33	chr7:71099200-71101400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr7:71099200-71101600	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr7:71099200-71102400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr7:71099200-71102400	Weak transcription	HSMM	muscle
37	chr7:71099200-71102600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr7:71099200-71102600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr7:71099200-71102600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr7:71099200-71102600	Weak transcription	NHDF-Ad	bronchial
41	chr7:71099200-71102600	Weak transcription	Osteobl	bone
42	chr7:71099200-71108200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr7:71099400-71100200	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr7:71099400-71101000	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr7:71099400-71101000	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr7:71099400-71101200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr7:71099400-71101200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr7:71099400-71101200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr7:71099400-71101200	Weak transcription	NHEK	skin
50	chr7:71099400-71101400	Weak transcription	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links