Variant report

Variant	rs11766705
Chromosome Location	chr7:21983778-21983779
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7790135	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018133	chr7:21740118-22055283	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv870325	chr7:21979039-22120493	Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21938600-21984000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr7:21973200-21984200	Weak transcription	Esophagus	oesophagus
3	chr7:21976800-21984000	Weak transcription	Adipose Nuclei	Adipose
4	chr7:21978400-21984000	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr7:21979200-21984000	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr7:21979400-21984200	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr7:21979800-21984000	Weak transcription	Fetal Kidney	kidney
8	chr7:21980200-21984000	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr7:21980400-21984000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr7:21980400-21984200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr7:21980400-21984200	Weak transcription	Psoas Muscle	Psoas
12	chr7:21980800-21983800	Enhancers	Rectal Smooth Muscle	rectum
13	chr7:21980800-21984000	Enhancers	Duodenum Mucosa	Duodenum
14	chr7:21981000-21983800	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr7:21981000-21984000	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr7:21981000-21984000	Enhancers	Fetal Thymus	thymus
17	chr7:21981200-21984000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
18	chr7:21981200-21984000	Enhancers	Fetal Lung	lung
19	chr7:21981600-21983800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr7:21981600-21983800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
21	chr7:21981600-21984000	Weak transcription	HMEC	breast
22	chr7:21981600-21984200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr7:21981800-21984000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr7:21981800-21984000	Weak transcription	Right Atrium	heart
25	chr7:21982000-21984000	Enhancers	Primary hematopoietic stem cells	blood
26	chr7:21982000-21984000	Enhancers	Fetal Stomach	stomach
27	chr7:21982200-21984000	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chr7:21982400-21984000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr7:21982400-21984200	Enhancers	Pancreas	Pancrea
30	chr7:21982400-21984200	Enhancers	Sigmoid Colon	Sigmoid Colon
31	chr7:21982600-21983800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
32	chr7:21982600-21983800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr7:21982600-21984000	Enhancers	Primary T helper naive cells from peripheral blood	blood
34	chr7:21982600-21984000	Enhancers	NH-A	brain
35	chr7:21982600-21984200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr7:21982600-21984200	Enhancers	Primary T cells fromperipheralblood	blood
37	chr7:21982800-21984000	Enhancers	Muscle Satellite Cultured Cells	--
38	chr7:21982800-21985800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr7:21983000-21983800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr7:21983000-21983800	Flanking Active TSS	Primary T cells from cord blood	blood
41	chr7:21983000-21984000	Enhancers	NHLF	lung
42	chr7:21983000-21984000	Enhancers	Osteobl	bone
43	chr7:21983000-21984200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr7:21983000-21984200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr7:21983000-21984200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr7:21983000-21984200	Enhancers	Brain Cingulate Gyrus	brain
47	chr7:21983000-21984200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr7:21983000-21984200	Enhancers	Brain Substantia Nigra	brain
49	chr7:21983000-21984400	Weak transcription	Stomach Mucosa	stomach
50	chr7:21983000-21984800	Flanking Active TSS	Primary B cells from cord blood	blood

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