Variant report

Variant	rs11769008
Chromosome Location	chr7:64160313-64160314
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10085367	0.81[AMR][1000 genomes]
rs10247618	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs10248287	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs10253381	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10273013	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs11974709	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11980700	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17779736	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs28537641	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs28879694	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3750027	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3750029	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs56955205	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs58101050	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs6460176	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs6460178	0.80[EUR][1000 genomes]
rs66509430	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6944849	0.91[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs6963252	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs6966466	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs6969837	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs6970764	0.83[AMR][1000 genomes]
rs6973346	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs73136779	0.83[AMR][1000 genomes]
rs73136786	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73136802	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7782515	0.81[AMR][1000 genomes]
rs7802372	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7804972	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs9791622	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422405	chr7:63709739-64632341	Enhancers Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
2	nsv427787	chr7:63741770-64419520	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	esv2764000	chr7:63766980-64275251	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
4	esv2755057	chr7:63819849-64345822	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
5	nsv1031703	chr7:63839601-64225952	Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
6	nsv464518	chr7:63881238-64506904	Enhancers ZNF genes & repeats Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
7	nsv607312	chr7:63881238-64506904	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
8	nsv888271	chr7:63961212-64295884	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
9	nsv888273	chr7:63990100-64291622	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
10	nsv888274	chr7:63990100-64331123	Strong transcription ZNF genes & repeats Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
11	nsv888275	chr7:63990100-64468590	Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
12	nsv888276	chr7:63990100-64511564	Strong transcription ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
13	esv16290	chr7:64058602-64162829	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
14	nsv888279	chr7:64094285-64331123	Strong transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
15	esv3394685	chr7:64150166-64268675	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs11769008	ZNF107	Cis_1M	lymphoblastoid	RTeQTL
rs11769008	ZNF107	cis	Esophagus Mucosa	GTEx
rs11769008	RP11-561N12.7	cis	Skin Sun Exposed Lower leg	GTEx
rs11769008	ZNF107	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:64128200-64167600	Weak transcription	Hela-S3	cervix
2	chr7:64128200-64168000	Weak transcription	Brain Angular Gyrus	brain
3	chr7:64128800-64168000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr7:64138600-64162200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr7:64138600-64168400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr7:64143800-64167000	Weak transcription	Fetal Heart	heart
7	chr7:64145400-64166800	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr7:64145600-64163000	Weak transcription	Right Ventricle	heart
9	chr7:64146000-64167000	Weak transcription	Brain Substantia Nigra	brain
10	chr7:64146400-64166800	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr7:64146600-64166200	Weak transcription	Brain Anterior Caudate	brain
12	chr7:64146800-64163200	Weak transcription	Gastric	stomach
13	chr7:64146800-64167000	Weak transcription	Stomach Smooth Muscle	stomach
14	chr7:64147400-64161800	Weak transcription	HSMMtube	muscle
15	chr7:64148000-64162800	Weak transcription	HepG2	liver
16	chr7:64148000-64163600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr7:64150200-64160400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr7:64150200-64166200	Weak transcription	Colon Smooth Muscle	Colon
19	chr7:64150400-64166800	Weak transcription	Brain Hippocampus Middle	brain
20	chr7:64151600-64161400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr7:64152800-64160400	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr7:64153400-64161600	Weak transcription	Osteobl	bone
23	chr7:64153800-64168000	ZNF genes & repeats	Dnd41	blood
24	chr7:64153800-64170200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
25	chr7:64154600-64160600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr7:64154800-64164800	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr7:64155000-64169600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
28	chr7:64155000-64170000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
29	chr7:64155200-64161600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr7:64155600-64162400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr7:64155800-64168000	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
32	chr7:64156200-64161000	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
33	chr7:64156600-64161000	Strong transcription	Adipose Nuclei	Adipose
34	chr7:64156800-64162400	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
35	chr7:64156800-64164800	Weak transcription	Aorta	Aorta
36	chr7:64157000-64163800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr7:64157800-64160800	ZNF genes & repeats	Fetal Intestine Large	intestine
38	chr7:64158000-64163400	ZNF genes & repeats	Fetal Intestine Small	intestine
39	chr7:64158200-64162200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
40	chr7:64158200-64162400	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
41	chr7:64158200-64167600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr7:64158400-64160800	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
43	chr7:64158400-64160800	ZNF genes & repeats	Brain Germinal Matrix	brain
44	chr7:64158400-64162000	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
45	chr7:64158400-64162000	ZNF genes & repeats	GM12878-XiMat	blood
46	chr7:64158400-64162400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr7:64158400-64162400	ZNF genes & repeats	Primary T cells from cord blood	blood
48	chr7:64158800-64160800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr7:64158800-64161400	ZNF genes & repeats	Fetal Brain Female	brain
50	chr7:64158800-64162200	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung

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