Variant report

Variant	rs11769087
Chromosome Location	chr7:128063371-128063372
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:128045147..128050080-chr7:128061541..128066850,10	MCF-7	breast:
2	chr7:128035982..128041518-chr7:128062564..128068284,7	MCF-7	breast:
3	chr7:128050107..128052046-chr7:128063361..128066207,2	MCF-7	breast:
4	chr7:128044912..128048334-chr7:128062375..128066541,5	K562	blood:
5	chr7:128058762..128061562-chr7:128063088..128065048,2	K562	blood:
6	chr7:128042298..128048334-chr7:128059762..128065417,7	K562	blood:
7	chr7:128063091..128065550-chr7:128065722..128067520,2	K562	blood:
8	chr7:128055642..128057274-chr7:128062858..128065377,2	MCF-7	breast:
9	chr7:128048374..128053724-chr7:128060919..128066147,7	K562	blood:
10	chr7:128044762..128048052-chr7:128061346..128064155,3	MCF-7	breast:
11	chr7:127982008..127984015-chr7:128061546..128064363,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000106344	Chromatin interaction
ENSG00000106348	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1048531	0.90[AMR][1000 genomes]
rs10954185	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11763326	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11764599	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11766548	0.86[ASN][1000 genomes]
rs11766743	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11769168	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11769333	0.86[ASN][1000 genomes]
rs11771063	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11771514	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12532613	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12540060	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12540762	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1864232	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2288550	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2288554	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35501542	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3793164	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55706726	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57124454	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57715170	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58727049	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62481099	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62481100	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62481103	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62481115	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62481116	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62481123	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62481124	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs66511422	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831124	chr7:127970345-128147910	Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
2	nsv889191	chr7:127973133-128073326	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:128051400-128086200	Weak transcription	Right Atrium	heart
2	chr7:128055800-128063800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr7:128060400-128065000	Enhancers	Fetal Muscle Leg	muscle
4	chr7:128060600-128063600	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr7:128060600-128064800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr7:128061000-128063800	Weak transcription	Stomach Smooth Muscle	stomach
7	chr7:128061000-128064000	Enhancers	Primary T cells fromperipheralblood	blood
8	chr7:128061000-128065200	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr7:128061800-128063800	Enhancers	Fetal Brain Male	brain
10	chr7:128062200-128064000	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr7:128062200-128064000	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr7:128062400-128063800	Enhancers	Fetal Brain Female	brain
13	chr7:128062600-128064200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr7:128062600-128064800	Enhancers	HepG2	liver
15	chr7:128062800-128064000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr7:128063000-128063800	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr7:128063000-128063800	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr7:128063000-128064200	Enhancers	Adipose Nuclei	Adipose
19	chr7:128063000-128064200	Enhancers	Liver	Liver
20	chr7:128063000-128064400	Enhancers	Hela-S3	cervix
21	chr7:128063000-128071600	Weak transcription	Brain Hippocampus Middle	brain
22	chr7:128063200-128063800	Weak transcription	Esophagus	oesophagus
23	chr7:128063200-128064000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr7:128063200-128065600	Weak transcription	Placenta	Placenta

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