Variant report

Variant	rs11769145
Chromosome Location	chr7:70704068-70704069
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:70700080..70701840-chr7:70703874..70706037,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10260768	0.97[LWK][hapmap];1.00[MKK][hapmap];0.91[YRI][hapmap];0.88[AFR][1000 genomes]
rs11770998	0.94[GIH][hapmap]
rs16869397	0.94[GIH][hapmap]
rs17593748	0.81[GIH][hapmap]
rs28411762	0.88[AFR][1000 genomes]
rs6974582	0.80[YRI][hapmap]
rs7806416	0.94[LWK][hapmap];0.92[MKK][hapmap]
rs7811880	0.80[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1034662	chr7:70275712-70722953	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv888343	chr7:70641761-70743033	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11769145	NSUN5	cis	parietal	SCAN

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70700400-70704800	Enhancers	Ovary	ovary
2	chr7:70700600-70705400	Enhancers	Fetal Muscle Leg	muscle
3	chr7:70700600-70705600	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr7:70700800-70704400	Enhancers	Fetal Muscle Trunk	muscle
5	chr7:70700800-70704800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr7:70701200-70704600	Enhancers	Fetal Stomach	stomach
7	chr7:70701200-70705000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr7:70701200-70705200	Enhancers	Rectal Smooth Muscle	rectum
9	chr7:70701400-70704800	Enhancers	Fetal Heart	heart
10	chr7:70701400-70706800	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr7:70701600-70704800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
12	chr7:70701600-70705200	Enhancers	Fetal Lung	lung
13	chr7:70701600-70720400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr7:70701800-70705200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr7:70702200-70704800	Weak transcription	Brain Anterior Caudate	brain
16	chr7:70702200-70705200	Enhancers	Colon Smooth Muscle	Colon
17	chr7:70702200-70705600	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr7:70702200-70713600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr7:70702200-70719600	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr7:70702400-70705400	Enhancers	HSMMtube	muscle
21	chr7:70702600-70704200	Enhancers	H1 Cell Line	embryonic stem cell
22	chr7:70702600-70704200	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr7:70702800-70705200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr7:70702800-70705200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr7:70702800-70705200	Enhancers	Fetal Brain Male	brain
26	chr7:70702800-70705400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr7:70703000-70704800	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr7:70703200-70704200	Enhancers	Left Ventricle	heart
29	chr7:70703200-70705000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr7:70703400-70704200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr7:70703400-70704800	Enhancers	NH-A	brain
32	chr7:70703600-70704600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr7:70703600-70705200	Enhancers	Psoas Muscle	Psoas
34	chr7:70703600-70713800	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr7:70703800-70704200	Enhancers	Pancreas	Pancrea
36	chr7:70703800-70704800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr7:70703800-70713600	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr7:70704000-70704400	Weak transcription	Brain Angular Gyrus	brain
39	chr7:70704000-70704800	Enhancers	Brain Inferior Temporal Lobe	brain
40	chr7:70704000-70704800	Enhancers	Placenta Amnion	Placenta Amnion
41	chr7:70704000-70706000	Weak transcription	Aorta	Aorta
42	chr7:70704000-70709800	Weak transcription	Right Ventricle	heart
43	chr7:70704000-70713600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links