Variant report

Variant	rs11770642
Chromosome Location	chr7:99740717-99740718
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:99739079..99742104-chr7:99744920..99746828,3	MCF-7	breast:
2	chr7:99739427..99740953-chr7:99741554..99744505,2	K562	blood:
3	chr7:99739422..99741762-chr7:99745236..99747226,2	MCF-7	breast:
4	chr7:99740228..99744424-chr7:99744987..99748272,6	K562	blood:
5	chr7:99739407..99742244-chr7:99753484..99755089,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000188186	Chromatin interaction
ENSG00000146826	Chromatin interaction
ENSG00000266154	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10260215	1.00[CHD][hapmap]
rs11764527	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829865	chr7:99430678-99755141	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1131 gene(s)	inside rSNPs	diseases
2	esv1830649	chr7:99430678-99755141	Strong transcription Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1131 gene(s)	inside rSNPs	diseases
3	nsv534298	chr7:99478011-99886076	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1132 gene(s)	inside rSNPs	diseases
4	nsv469687	chr7:99572543-99755141	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1115 gene(s)	inside rSNPs	diseases
5	nsv482601	chr7:99572543-99755141	Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1115 gene(s)	inside rSNPs	diseases
6	nsv607931	chr7:99664817-99796146	Bivalent Enhancer Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1097 gene(s)	inside rSNPs	diseases
7	esv1798486	chr7:99689883-99930879	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1085 gene(s)	inside rSNPs	diseases
8	esv1833059	chr7:99689883-99930879	Flanking Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1085 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99728800-99746000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr7:99731000-99745600	Weak transcription	Pancreas	Pancrea
3	chr7:99736200-99741800	Weak transcription	Thymus	Thymus
4	chr7:99736200-99745800	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr7:99736400-99745600	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr7:99738800-99741000	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr7:99739000-99741000	Enhancers	Duodenum Mucosa	Duodenum
8	chr7:99739400-99741200	Enhancers	Rectal Mucosa Donor 29	rectum
9	chr7:99739400-99745800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr7:99739400-99745800	Weak transcription	Stomach Mucosa	stomach
11	chr7:99739400-99745800	Weak transcription	GM12878-XiMat	blood
12	chr7:99739400-99745800	Weak transcription	NHEK	skin
13	chr7:99739600-99743800	Weak transcription	Hela-S3	cervix
14	chr7:99739800-99741400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr7:99740000-99741000	Enhancers	HepG2	liver
16	chr7:99740000-99741200	Enhancers	Primary neutrophils fromperipheralblood	blood
17	chr7:99740000-99745800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr7:99740200-99745800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr7:99740200-99745800	Weak transcription	Fetal Intestine Large	intestine
20	chr7:99740200-99745800	Weak transcription	Placenta	Placenta
21	chr7:99740400-99743800	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr7:99740400-99745800	Weak transcription	Colonic Mucosa	Colon
23	chr7:99740600-99744000	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr7:99740600-99745400	Weak transcription	Primary B cells from cord blood	blood

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