Variant report

Variant	rs11770825
Chromosome Location	chr7:87740565-87740566
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:87516318..87516829-chr7:87740097..87741002,2	MCF-7	breast:
2	chr7:87426880..87428200-chr7:87740409..87741499,6	K562	blood:
3	chr7:87427067..87428110-chr7:87740458..87741372,5	MCF-7	breast:
4	chr7:87515924..87516779-chr7:87740516..87741321,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10227241	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10229877	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10234048	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10234412	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10272494	0.83[ASN][1000 genomes]
rs10281274	1.00[ASN][1000 genomes]
rs10952910	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10952911	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10952914	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12540117	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12670301	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13245213	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2237540	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2282957	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2299199	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2301998	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3753105	0.88[EUR][1000 genomes]
rs3753106	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4727151	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4727152	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61598739	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62486408	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6465129	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6951172	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6955194	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6964103	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6968026	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6971348	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs726328	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7793051	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9632709	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9641023	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9691240	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888677	chr7:86802025-87781111	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1015862	chr7:87075394-88049798	Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv1023352	chr7:87418818-88192925	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv539005	chr7:87418818-88192925	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv525073	chr7:87535096-87812968	Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11770825	ADAM22	cis	Muscle Skeletal	GTEx

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:87737400-87741200	Weak transcription	Fetal Lung	lung
2	chr7:87739000-87745600	Weak transcription	Psoas Muscle	Psoas
3	chr7:87739200-87741800	Weak transcription	Fetal Muscle Leg	muscle
4	chr7:87739400-87741400	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr7:87739600-87740600	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr7:87740400-87740600	Enhancers	Pancreatic Islets	Pancreatic Islet
7	chr7:87740400-87740800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr7:87740400-87740800	Enhancers	Muscle Satellite Cultured Cells	--

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