Variant report

Variant	rs11771129
Chromosome Location	chr7:140114166-140114167
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:140074788..140077221-chr7:140112867..140115069,2	K562	blood:
2	chr7:140114157..140116268-chr7:140126523..140129319,2	K562	blood:

Variant related genes	Relation type
ENSG00000238868	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs4466315	1.00[JPT][hapmap]
rs6952163	1.00[CHB][hapmap]
rs73485799	1.00[AMR][1000 genomes]
rs73487622	1.00[AMR][1000 genomes]
rs7794025	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022919	chr7:140043299-140120546	Active TSS Genic enhancers Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	esv2762706	chr7:140054170-140119629	Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv522190	chr7:140066411-140130663	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv464734	chr7:140108096-140217670	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv608500	chr7:140108096-140217670	Genic enhancers Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140104200-140125800	Weak transcription	Right Atrium	heart
2	chr7:140104200-140133400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr7:140104400-140117800	Weak transcription	Colonic Mucosa	Colon
4	chr7:140104600-140117000	Weak transcription	Primary hematopoietic stem cells	blood
5	chr7:140104600-140117400	Weak transcription	Primary B cells from cord blood	blood
6	chr7:140104600-140127800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr7:140104800-140116400	Weak transcription	Thymus	Thymus
8	chr7:140104800-140116600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr7:140104800-140117200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr7:140104800-140117400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr7:140104800-140125600	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr7:140104800-140125600	Weak transcription	Gastric	stomach
13	chr7:140104800-140125800	Weak transcription	Duodenum Mucosa	Duodenum
14	chr7:140104800-140126000	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr7:140104800-140126000	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr7:140104800-140128200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr7:140104800-140129000	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr7:140105000-140119000	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr7:140105000-140126600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr7:140105000-140128200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr7:140105000-140132400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr7:140106800-140117600	Strong transcription	Primary neutrophils fromperipheralblood	blood
23	chr7:140107400-140116400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr7:140107600-140116400	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr7:140111400-140115400	Strong transcription	Primary T cells from cord blood	blood
26	chr7:140111600-140114600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
27	chr7:140112400-140117200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr7:140112800-140114800	Strong transcription	Sigmoid Colon	Sigmoid Colon
29	chr7:140112800-140115000	Weak transcription	Primary T cells fromperipheralblood	blood
30	chr7:140113200-140114600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr7:140113200-140125800	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr7:140113600-140114400	Enhancers	HSMMtube	muscle
33	chr7:140113600-140114600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr7:140113800-140114200	Bivalent Enhancer	K562	blood
35	chr7:140113800-140128200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr7:140114000-140114800	Genic enhancers	Pancreas	Pancrea
37	chr7:140114000-140125600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr7:140114000-140127400	Weak transcription	Fetal Intestine Small	intestine

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