Variant report

Variant	rs117724516
Chromosome Location	chr1:168439930-168439931
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:168431347..168434389-chr1:168437766..168440799,3	MCF-7	breast:
2	chr1:168430768..168433415-chr1:168437699..168440443,2	K562	blood:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv947331	chr1:168436140-168440596	Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3401824	chr1:168439853-168442701	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168433800-168443400	Weak transcription	Liver	Liver
2	chr1:168434400-168443600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:168434800-168440800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr1:168435000-168440400	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr1:168435000-168440600	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr1:168435000-168440600	Enhancers	Rectal Smooth Muscle	rectum
7	chr1:168435200-168440000	Enhancers	Primary T cells from cord blood	blood
8	chr1:168435200-168440200	Enhancers	Muscle Satellite Cultured Cells	--
9	chr1:168435200-168440400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr1:168435200-168440400	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr1:168435200-168440400	Enhancers	HSMM	muscle
12	chr1:168435200-168440600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr1:168435200-168440600	Enhancers	Colon Smooth Muscle	Colon
14	chr1:168435200-168440600	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr1:168435200-168440600	Enhancers	HMEC	breast
16	chr1:168435200-168440600	Enhancers	NHEK	skin
17	chr1:168435200-168440800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr1:168435400-168440600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr1:168435800-168451400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr1:168436200-168440000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr1:168436200-168440200	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr1:168436400-168441400	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr1:168436800-168440000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr1:168436800-168440000	Enhancers	Osteobl	bone
25	chr1:168436800-168440600	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr1:168437000-168440600	Enhancers	Duodenum Mucosa	Duodenum
27	chr1:168437000-168440800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
28	chr1:168437200-168440200	Enhancers	NH-A	brain
29	chr1:168437200-168440600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
30	chr1:168437200-168440600	Enhancers	Primary T killer memory cells from peripheral blood	blood
31	chr1:168437200-168440800	Enhancers	Primary T helper cells PMA-I stimulated	--
32	chr1:168437400-168440600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr1:168437400-168440600	Enhancers	HepG2	liver
34	chr1:168437400-168440800	Enhancers	Primary hematopoietic stem cells short term culture	blood
35	chr1:168437600-168440600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
36	chr1:168437600-168440600	Enhancers	NHLF	lung
37	chr1:168437600-168440800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
38	chr1:168437800-168440200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr1:168437800-168440400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr1:168437800-168440600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
41	chr1:168438400-168440200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr1:168438600-168440600	Enhancers	ES-I3 Cell Line	embryonic stem cell
43	chr1:168438600-168440600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr1:168438800-168440000	Enhancers	Monocytes-CD14+_RO01746	blood
45	chr1:168438800-168440400	Weak transcription	Fetal Kidney	kidney
46	chr1:168438800-168440600	Enhancers	Hela-S3	cervix
47	chr1:168438800-168440800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr1:168439000-168440200	Weak transcription	Fetal Stomach	stomach
49	chr1:168439200-168440200	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr1:168439200-168440400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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