Variant report

Variant	rs11772563
Chromosome Location	chr7:96663631-96663632
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11762454	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11772600	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11773615	0.80[ASN][1000 genomes]
rs13242759	0.80[ASN][1000 genomes]
rs1526087	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17658419	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34094002	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3757493	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6960249	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7800583	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv824221	chr7:96620279-96669211	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:96663400-96663800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:96663600-96664000	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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