Variant report

Variant	rs11772651
Chromosome Location	chr7:7958584-7958585
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:7958467..7959967-chr7:8328195..8331123,2	K562	blood:
2	chr7:7952035..7955913-chr7:7956512..7960009,4	MCF-7	breast:
3	chr7:7956835..7959922-chr7:8007692..8010316,3	MCF-7	breast:
4	chr7:7958223..7960322-chr7:7962105..7964489,3	MCF-7	breast:
5	chr7:7951218..7952780-chr7:7955913..7958820,2	K562	blood:
6	chr7:7949350..7952293-chr7:7956418..7958594,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000106415	Chromatin interaction
ENSG00000214998	Chromatin interaction
ENSG00000233108	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10232814	0.97[ASN][1000 genomes]
rs12702674	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12702675	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12702677	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12702678	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12702679	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12702680	0.81[EUR][1000 genomes]
rs13227740	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2013668	0.82[ASN][1000 genomes]
rs35509495	0.82[EUR][1000 genomes]
rs6463746	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6463747	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6950643	0.93[ASN][1000 genomes]
rs6957537	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026758	chr7:7187491-8075259	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	nsv1032670	chr7:7535515-8017077	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
3	esv2752177	chr7:7729247-8177689	Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv917172	chr7:7854632-8807385	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
5	nsv1030180	chr7:7860424-8059221	Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
6	nsv464304	chr7:7913819-7970560	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv606046	chr7:7913819-7970560	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	esv3346837	chr7:7915187-8068557	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
9	nsv1020161	chr7:7929384-8047553	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
10	nsv525502	chr7:7938596-7996590	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
11	nsv606048	chr7:7938596-7996590	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
12	nsv606049	chr7:7949059-7967424	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:7942600-7963600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:7943000-7958800	Weak transcription	Aorta	Aorta
3	chr7:7944400-7959600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr7:7949200-7960200	Weak transcription	Rectal Smooth Muscle	rectum
5	chr7:7953400-7959800	Weak transcription	Brain Germinal Matrix	brain
6	chr7:7953600-7958800	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr7:7953600-7963200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr7:7953800-7958800	Weak transcription	Liver	Liver
9	chr7:7955600-7959600	Weak transcription	Fetal Intestine Small	intestine
10	chr7:7957400-7960600	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr7:7957600-7959000	Enhancers	Ovary	ovary
12	chr7:7957600-7964600	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr7:7957800-7958600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr7:7957800-7960400	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr7:7957800-7964200	Enhancers	Primary B cells from peripheral blood	blood
16	chr7:7958000-7958800	Enhancers	H1 Cell Line	embryonic stem cell
17	chr7:7958000-7960200	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr7:7958000-7960400	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr7:7958000-7964600	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr7:7958200-7960200	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr7:7958400-7961000	Flanking Active TSS	GM12878-XiMat	blood
22	chr7:7958400-7964600	Enhancers	Primary B cells from cord blood	blood

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