Variant report

Variant	rs11772652
Chromosome Location	chr7:15621218-15621219
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10226211	1.00[ASN][1000 genomes]
rs10226348	1.00[ASN][1000 genomes]
rs10235133	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10240374	1.00[ASN][1000 genomes]
rs10256041	1.00[ASN][1000 genomes]
rs10271775	1.00[ASN][1000 genomes]
rs10281909	1.00[ASN][1000 genomes]
rs11763353	1.00[ASN][1000 genomes]
rs11764580	1.00[ASN][1000 genomes]
rs12699743	1.00[ASN][1000 genomes]
rs12699744	1.00[ASN][1000 genomes]
rs12699745	1.00[ASN][1000 genomes]
rs12699746	1.00[ASN][1000 genomes]
rs13221521	1.00[ASN][1000 genomes]
rs13232530	1.00[ASN][1000 genomes]
rs17168892	1.00[ASN][1000 genomes]
rs17168895	1.00[ASN][1000 genomes]
rs34067265	1.00[ASN][1000 genomes]
rs36006886	1.00[ASN][1000 genomes]
rs36125507	0.84[ASN][1000 genomes]
rs6461191	1.00[ASN][1000 genomes]
rs6949770	1.00[ASN][1000 genomes]
rs6967149	1.00[ASN][1000 genomes]
rs6969519	0.82[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs6975310	0.82[ASN][1000 genomes]
rs71540711	1.00[ASN][1000 genomes]
rs7788105	1.00[ASN][1000 genomes]
rs7791533	1.00[ASN][1000 genomes]
rs7796353	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032866	chr7:15336831-15622515	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv932168	chr7:15573437-15895294	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv606297	chr7:15582208-15621650	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv523199	chr7:15582208-16042596	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	nsv606298	chr7:15598156-15621650	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv606299	chr7:15603853-15637887	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:15619800-15624400	Weak transcription	Left Ventricle	heart
2	chr7:15620200-15621400	Enhancers	Colon Smooth Muscle	Colon
3	chr7:15620200-15621400	Enhancers	Fetal Intestine Small	intestine
4	chr7:15620600-15621400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr7:15620800-15621400	Enhancers	Duodenum Smooth Muscle	Duodenum
6	chr7:15621000-15624400	Weak transcription	Fetal Lung	lung
7	chr7:15621200-15621800	Enhancers	Liver	Liver
8	chr7:15621200-15621800	Enhancers	NHDF-Ad	bronchial

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