Variant report

Variant	rs11773160
Chromosome Location	chr7:127457610-127457611
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:127457487..127459483-chr7:127460285..127462225,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10226394	0.93[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs10246505	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10265516	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10270127	0.87[CEU][hapmap]
rs10280863	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1035295	0.85[EUR][1000 genomes]
rs11765620	0.93[ASN][1000 genomes]
rs11767317	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1440972	0.93[ASN][1000 genomes]
rs3757764	0.93[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3757768	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3808080	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3808081	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3808083	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3808089	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4473953	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57103099	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6467152	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6943219	0.93[CEU][hapmap];1.00[CHB][hapmap]
rs6943385	0.93[CEU][hapmap];1.00[CHB][hapmap]
rs6947779	0.91[ASN][1000 genomes]
rs6953134	0.93[CEU][hapmap];1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs6965698	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6969353	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6976887	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6979634	0.93[CEU][hapmap];1.00[CHB][hapmap]
rs7778413	0.93[CEU][hapmap];1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs7781189	0.93[CEU][hapmap];0.94[CHB][hapmap]
rs7783102	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7784200	0.88[CHB][hapmap]
rs7786786	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs806176	0.82[CHB][hapmap]
rs806178	0.82[CHB][hapmap]
rs806179	0.86[CEU][hapmap];0.94[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022385	chr7:127246656-127971194	Weak transcription Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv539120	chr7:127246656-127971194	Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv1016143	chr7:127251359-127726762	Strong transcription Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv831123	chr7:127289511-127510396	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv526535	chr7:127445594-127623840	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127382000-127473000	Weak transcription	Hela-S3	cervix
2	chr7:127435000-127459800	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr7:127440200-127460800	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr7:127441200-127460000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr7:127441400-127458200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr7:127443200-127460200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr7:127448000-127459600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr7:127448400-127484800	Weak transcription	Aorta	Aorta
9	chr7:127448600-127459600	Weak transcription	Fetal Intestine Small	intestine
10	chr7:127449000-127484200	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr7:127449200-127459600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr7:127449200-127460000	Weak transcription	NH-A	brain
13	chr7:127449200-127460400	Weak transcription	Placenta	Placenta
14	chr7:127449400-127458600	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr7:127449400-127460000	Weak transcription	Primary B cells from peripheral blood	blood
16	chr7:127449600-127459400	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr7:127449600-127459600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr7:127449600-127459800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr7:127449600-127460200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr7:127449600-127460800	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr7:127449600-127461200	Weak transcription	Right Atrium	heart
22	chr7:127449600-127472600	Weak transcription	Lung	lung
23	chr7:127449800-127459600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr7:127449800-127459800	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr7:127449800-127460000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr7:127449800-127460000	Weak transcription	Fetal Intestine Large	intestine
27	chr7:127449800-127460000	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr7:127449800-127460000	Weak transcription	Small Intestine	intestine
29	chr7:127449800-127460200	Weak transcription	Fetal Stomach	stomach
30	chr7:127449800-127460200	Weak transcription	NHEK	skin
31	chr7:127449800-127460800	Weak transcription	Brain Substantia Nigra	brain
32	chr7:127449800-127460800	Weak transcription	Fetal Thymus	thymus
33	chr7:127449800-127469200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr7:127450000-127459600	Weak transcription	Primary hematopoietic stem cells	blood
35	chr7:127450000-127459600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr7:127450000-127460800	Weak transcription	Liver	Liver
37	chr7:127450200-127458600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr7:127450400-127457800	Weak transcription	Adipose Nuclei	Adipose
39	chr7:127450400-127459600	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr7:127450400-127460200	Weak transcription	Duodenum Mucosa	Duodenum
41	chr7:127450400-127460200	Weak transcription	HMEC	breast
42	chr7:127450600-127460000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr7:127450800-127471200	Weak transcription	Dnd41	blood
44	chr7:127451200-127460000	Weak transcription	Primary B cells from cord blood	blood
45	chr7:127452600-127460000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr7:127452800-127460000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr7:127452800-127460400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr7:127452800-127462600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr7:127453000-127459600	Weak transcription	Psoas Muscle	Psoas
50	chr7:127453200-127459800	Weak transcription	Colon Smooth Muscle	Colon

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