Variant report

Variant	rs11773272
Chromosome Location	chr7:70613876-70613877
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12539682	0.84[AMR][1000 genomes]
rs2040970	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34895774	0.83[AMR][1000 genomes]
rs56344545	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1034662	chr7:70275712-70722953	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70611600-70623800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:70611800-70615800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr7:70611800-70616000	Weak transcription	Colon Smooth Muscle	Colon
4	chr7:70611800-70617000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr7:70611800-70620200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr7:70612000-70614400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr7:70612000-70614400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr7:70612000-70614400	Weak transcription	Pancreas	Pancrea
9	chr7:70612000-70615800	Weak transcription	Left Ventricle	heart
10	chr7:70612000-70617000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr7:70612000-70619800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr7:70612000-70636400	Weak transcription	Ovary	ovary
13	chr7:70612200-70614400	Weak transcription	Fetal Stomach	stomach
14	chr7:70612200-70650600	Weak transcription	Fetal Lung	lung
15	chr7:70612800-70615000	Strong transcription	H1 Cell Line	embryonic stem cell
16	chr7:70612800-70615000	Strong transcription	HUES64 Cell Line	embryonic stem cell
17	chr7:70612800-70616200	Strong transcription	HUES6 Cell Line	embryonic stem cell
18	chr7:70613000-70614600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr7:70613000-70614800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
20	chr7:70613000-70616000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr7:70613400-70614400	Weak transcription	Fetal Muscle Leg	muscle
22	chr7:70613400-70614600	Weak transcription	Fetal Muscle Trunk	muscle
23	chr7:70613400-70614800	Weak transcription	Aorta	Aorta
24	chr7:70613400-70622600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr7:70613400-70624600	Weak transcription	Right Atrium	heart
26	chr7:70613800-70615200	Strong transcription	iPS-18 Cell Line	embryonic stem cell

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