Variant report

Variant	rs11773317
Chromosome Location	chr7:21582312-21582313
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10499531	1.00[JPT][hapmap]
rs11760336	0.82[CHB][hapmap];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11768728	1.00[JPT][hapmap]
rs17745898	1.00[JPT][hapmap]
rs56162213	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027302	chr7:21391598-21727016	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv538800	chr7:21391598-21727016	Enhancers Genic enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1028434	chr7:21468437-21636671	ZNF genes & repeats Strong transcription Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv1023655	chr7:21486485-21727016	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv538801	chr7:21486485-21727016	ZNF genes & repeats Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	nsv830921	chr7:21489100-21688016	Strong transcription ZNF genes & repeats Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
7	nsv1030577	chr7:21548909-21681379	Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
8	nsv1025634	chr7:21566727-21686272	Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21580600-21582400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:21582200-21582400	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
3	chr7:21582200-21582400	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
4	chr7:21582200-21582400	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
5	chr7:21582200-21582400	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
6	chr7:21582200-21582400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr7:21582200-21582400	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
8	chr7:21582200-21582400	Bivalent Enhancer	Primary hematopoietic stem cells	blood
9	chr7:21582200-21582400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr7:21582200-21582400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr7:21582200-21582400	Bivalent Enhancer	Brain Anterior Caudate	brain
12	chr7:21582200-21582400	Bivalent Enhancer	Brain Germinal Matrix	brain
13	chr7:21582200-21582400	Bivalent Enhancer	Duodenum Mucosa	Duodenum
14	chr7:21582200-21582400	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
15	chr7:21582200-21582400	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
16	chr7:21582200-21582400	Bivalent Enhancer	Fetal Muscle Leg	muscle
17	chr7:21582200-21582400	Enhancers	Pancreas	Pancrea
18	chr7:21582200-21582400	Bivalent/Poised TSS	Right Ventricle	heart
19	chr7:21582200-21582400	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
20	chr7:21582200-21582400	Bivalent/Poised TSS	Thymus	Thymus
21	chr7:21582200-21582600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
22	chr7:21582200-21583000	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
23	chr7:21582200-21583200	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr7:21582200-21583200	Bivalent/Poised TSS	Primary T cells from cord blood	blood
25	chr7:21582200-21583200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr7:21582200-21583200	Bivalent/Poised TSS	A549	lung
27	chr7:21582200-21583200	Bivalent/Poised TSS	NH-A	brain
28	chr7:21582200-21583400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr7:21582200-21583400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr7:21582200-21583600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
31	chr7:21582200-21583600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr7:21582200-21583600	Bivalent Enhancer	Stomach Mucosa	stomach
33	chr7:21582200-21583600	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
34	chr7:21582200-21583800	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
35	chr7:21582200-21583800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
36	chr7:21582200-21583800	Flanking Active TSS	Liver	Liver
37	chr7:21582200-21583800	Bivalent Enhancer	Fetal Brain Male	brain
38	chr7:21582200-21583800	Active TSS	Right Atrium	heart
39	chr7:21582200-21584000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
40	chr7:21582200-21584000	Active TSS	H9 Cell Line	embryonic stem cell
41	chr7:21582200-21584000	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr7:21582200-21584800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links