Variant report

Variant	rs117734979
Chromosome Location	chr9:96194123-96194124
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFF	chr9:96193973-96194636	HepG2	liver:	n/a	chr9:96194153-96194171
2	MAFF	chr9:96194055-96194255	K562	blood:	n/a	chr9:96194153-96194171
3	MAFK	chr9:96193882-96194318	K562	blood:	n/a	chr9:96194150-96194167 chr9:96194158-96194169 chr9:96194159-96194170 chr9:96194154-96194170 chr9:96194157-96194171 chr9:96194154-96194169 chr9:96194159-96194170
4	MAFK	chr9:96194019-96194301	IMR90	lung:	n/a	chr9:96194150-96194167 chr9:96194158-96194169 chr9:96194159-96194170 chr9:96194154-96194170 chr9:96194157-96194171 chr9:96194154-96194169 chr9:96194159-96194170
5	MAFK	chr9:96193992-96194704	HepG2	liver:	n/a	chr9:96194150-96194167 chr9:96194158-96194169 chr9:96194159-96194170 chr9:96194154-96194170 chr9:96194157-96194171 chr9:96194154-96194169 chr9:96194159-96194170
6	ELF1	chr9:96194076-96194357	HepG2	liver:	n/a	chr9:96194201-96194214 chr9:96194203-96194214 chr9:96194227-96194240
7	SIN3AK20	chr9:96193620-96194244	MCF-7	breast:	n/a	n/a
8	BHLHE40	chr9:96193930-96194262	HepG2	liver:	n/a	n/a
9	GATA3	chr9:96193665-96194316	MCF-7	breast:	n/a	n/a
10	GATA3	chr9:96193486-96194405	MCF-7	breast:	n/a	n/a
11	SPI1	chr9:96194039-96194383	HL-60	blood:	n/a	chr9:96194203-96194212
12	MYC	chr9:96193842-96194231	K562	blood:	n/a	n/a
13	ELF1	chr9:96193719-96194492	MCF-7	breast:	n/a	chr9:96194201-96194214 chr9:96194203-96194214 chr9:96194227-96194240
14	ELF1	chr9:96194080-96194356	HepG2	liver:	n/a	chr9:96194201-96194214 chr9:96194203-96194214 chr9:96194227-96194240
15	BHLHE40	chr9:96193824-96194318	K562	blood:	n/a	n/a
16	MAFK	chr9:96193865-96194772	HepG2	liver:	n/a	chr9:96194150-96194167 chr9:96194158-96194169 chr9:96194159-96194170 chr9:96194154-96194170 chr9:96194157-96194171 chr9:96194154-96194169 chr9:96194159-96194170
17	GABPA	chr9:96194111-96194296	HepG2	liver:	n/a	n/a
18	ZC3H11A	chr9:96194021-96194123	K562	blood:	n/a	n/a
19	GABPA	chr9:96194119-96194295	HepG2	liver:	n/a	n/a
20	SPI1	chr9:96194071-96194298	K562	blood:	n/a	chr9:96194203-96194212
21	FOXP2	chr9:96194092-96194337	SK-N-MC	brain:	n/a	n/a
22	ELF1	chr9:96194075-96194389	K562	blood:	n/a	chr9:96194201-96194214 chr9:96194203-96194214 chr9:96194227-96194240

No.	Distal block	Cell Line	Cell type
1	chr9:96054744..96057085-chr9:96193778..96195427,2	MCF-7	breast:
2	chr9:96193866..96195671-chr9:96205217..96208189,2	K562	blood:
3	chr9:96193694..96195891-chr9:96211466..96214118,3	K562	blood:
4	chr9:96194036..96195679-chr9:96195790..96198245,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAM120A-2	chr9:96193447-96194991	NONHSAT133251

Variant related genes	Relation type
ENSG00000237385	TF binding region
ENSG00000188938	Chromatin interaction
ENSG00000048828	Chromatin interaction
ENSG00000165238	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350329	chr9:96194029-96194345	Enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96185800-96208200	Weak transcription	Gastric	stomach
2	chr9:96186000-96208200	Weak transcription	Pancreas	Pancrea
3	chr9:96186600-96208200	Weak transcription	Lung	lung
4	chr9:96190600-96196600	Weak transcription	Placenta	Placenta
5	chr9:96192600-96194200	Weak transcription	Spleen	Spleen
6	chr9:96193000-96196600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr9:96193200-96194400	Enhancers	Fetal Intestine Large	intestine
8	chr9:96193800-96194200	Enhancers	Duodenum Mucosa	Duodenum
9	chr9:96193800-96194400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr9:96193800-96194400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr9:96193800-96194400	Enhancers	Fetal Intestine Small	intestine
12	chr9:96193800-96194400	Enhancers	Fetal Kidney	kidney
13	chr9:96193800-96194400	Enhancers	Small Intestine	intestine
14	chr9:96193800-96194400	Flanking Active TSS	HepG2	liver
15	chr9:96193800-96194400	Enhancers	K562	blood
16	chr9:96193800-96194800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr9:96194000-96194200	Enhancers	Primary T cells from cord blood	blood
18	chr9:96194000-96194400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr9:96194000-96194400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr9:96194000-96194400	Enhancers	Primary hematopoietic stem cells	blood
21	chr9:96194000-96194400	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr9:96194000-96194400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr9:96194000-96194400	Enhancers	Sigmoid Colon	Sigmoid Colon
24	chr9:96194000-96207800	Weak transcription	Thymus	Thymus

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