Variant report

Variant	rs11774196
Chromosome Location	chr8:50392406-50392407
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11774195	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11778771	0.82[AFR][1000 genomes]
rs13251649	0.85[AFR][1000 genomes]
rs13255488	0.82[AFR][1000 genomes]
rs13269976	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13279677	0.84[AFR][1000 genomes]
rs1356753	0.87[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs1533668	0.84[AFR][1000 genomes]
rs1563690	0.93[AFR][1000 genomes]
rs1603398	0.81[AFR][1000 genomes]
rs1632267	0.81[ASN][1000 genomes]
rs1674271	0.81[ASN][1000 genomes]
rs1715351	0.86[ASN][1000 genomes]
rs2047304	0.85[AFR][1000 genomes]
rs2056308	0.89[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs62503800	0.87[AFR][1000 genomes]
rs62503801	0.87[AFR][1000 genomes]
rs7819847	0.89[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs7836512	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034908	chr8:50023423-50416049	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv539601	chr8:50023423-50416049	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1024410	chr8:50037085-50511501	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv890857	chr8:50133485-50469764	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv917031	chr8:50207246-50709286	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv890858	chr8:50219675-50532935	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50391800-50392600	Enhancers	Brain Germinal Matrix	brain
2	chr8:50392400-50392800	Weak transcription	Stomach Mucosa	stomach
3	chr8:50392400-50393800	Enhancers	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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