Variant report

Variant	rs11774416
Chromosome Location	chr8:122325011-122325012
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10098524	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10108946	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10110068	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10505399	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10956015	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10956016	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10956024	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10956025	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11774560	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11776971	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11780879	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11784659	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11787462	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12542817	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12545502	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12548012	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12550352	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12675443	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13251111	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13257834	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13258169	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13261121	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13262587	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13263931	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13268694	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13273237	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13276913	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7000983	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7813656	0.94[EUR][1000 genomes]
rs7814245	0.96[EUR][1000 genomes]
rs7819094	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7819325	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7819377	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7819578	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7819933	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7820134	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7823206	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7834486	0.96[EUR][1000 genomes]
rs7835074	0.94[EUR][1000 genomes]
rs7835432	0.96[EUR][1000 genomes]
rs7835619	0.96[EUR][1000 genomes]
rs7835848	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891424	chr8:121873345-122393258	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv3330574	chr8:122039099-122386130	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv891426	chr8:122078334-122393258	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1017726	chr8:122307499-122339722	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1034220	chr8:122317048-122339722	Active TSS Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1028470	chr8:122317048-122350937	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1015918	chr8:122317724-122339722	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv2761238	chr8:122318550-122339722	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv520756	chr8:122318550-122341946	Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv18662	chr8:122318815-122339523	Weak transcription Flanking Active TSS Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv2421775	chr8:122320560-122341946	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv3693007	chr8:122320560-122341946	Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv465791	chr8:122320560-122341946	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv612130	chr8:122320560-122341946	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv442120	chr8:122321079-122339720	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv1025365	chr8:122323246-122394774	Weak transcription Flanking Active TSS Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:122322200-122330200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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