Variant report

Variant	rs117750857
Chromosome Location	chr2:168154351-168154352
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875377	chr2:168084857-168203116	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv875378	chr2:168107491-168297961	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	esv3364733	chr2:168109919-168302141	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv1008704	chr2:168153525-168196371	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:168151400-168163600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr2:168152000-168155600	Weak transcription	Brain Anterior Caudate	brain
3	chr2:168152000-168174400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr2:168152600-168160400	Weak transcription	Psoas Muscle	Psoas
5	chr2:168152600-168167000	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr2:168152800-168155800	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr2:168153000-168155000	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr2:168153200-168154600	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr2:168153200-168155000	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr2:168153400-168154600	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr2:168153600-168154600	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr2:168154000-168154400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr2:168154200-168154400	Bivalent Enhancer	Rectal Mucosa Donor 31	rectum
14	chr2:168154200-168154800	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr2:168154200-168157600	Weak transcription	H1 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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