Variant report

Variant	rs117751879
Chromosome Location	chr7:86276785-86276786
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:86262421..86264345-chr7:86274869..86277224,2	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025032	chr7:86032479-86642973	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv831053	chr7:86268171-86440999	Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv7104	chr7:86276739-86276930	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:86272600-86277200	Active TSS	Brain Hippocampus Middle	brain
2	chr7:86272600-86277200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
3	chr7:86272600-86277400	Active TSS	Brain Angular Gyrus	brain
4	chr7:86272600-86277800	Active TSS	Brain Cingulate Gyrus	brain
5	chr7:86272600-86278000	Active TSS	Brain Anterior Caudate	brain
6	chr7:86272600-86278000	Active TSS	Brain Inferior Temporal Lobe	brain
7	chr7:86274600-86277600	Active TSS	Fetal Brain Female	brain
8	chr7:86274600-86283200	Weak transcription	Right Atrium	heart
9	chr7:86275400-86277000	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr7:86275400-86283200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr7:86276000-86276800	Weak transcription	Brain Germinal Matrix	brain
12	chr7:86276000-86278400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr7:86276000-86278400	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr7:86276000-86278400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr7:86276000-86278800	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr7:86276400-86277200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr7:86276400-86278400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr7:86276600-86276800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
19	chr7:86276600-86276800	Flanking Active TSS	Brain Substantia Nigra	brain
20	chr7:86276600-86277000	Enhancers	Fetal Brain Male	brain
21	chr7:86276600-86278400	Enhancers	H1 Cell Line	embryonic stem cell
22	chr7:86276600-86278400	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr7:86276600-86278400	Enhancers	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links