Variant report

Variant	rs11775235
Chromosome Location	chr8:3265845-3265846
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1039491	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1039492	0.96[CEU][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1039493	0.96[CEU][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11136620	0.82[ASW][hapmap];0.91[CEU][hapmap];0.86[GIH][hapmap];0.83[MEX][hapmap];0.86[TSI][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11136621	0.96[CEU][hapmap];0.92[YRI][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11136622	0.96[CEU][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11136623	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs11785551	0.82[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap]
rs12543118	0.83[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs12543159	0.82[ASW][hapmap];0.96[CEU][hapmap];0.89[GIH][hapmap];0.83[MEX][hapmap];0.92[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12544077	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12545711	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12681614	0.91[EUR][1000 genomes]
rs13253365	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13275230	0.95[EUR][1000 genomes]
rs1447355	0.82[CHB][hapmap]
rs1553183	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs1995231	0.94[EUR][1000 genomes]
rs2166710	0.93[EUR][1000 genomes]
rs2166711	0.96[CEU][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.93[EUR][1000 genomes]
rs3802304	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3802305	0.93[EUR][1000 genomes]
rs3802306	0.96[CEU][hapmap];0.82[GIH][hapmap];0.82[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.94[EUR][1000 genomes]
rs62505568	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6990498	1.00[CHB][hapmap];0.82[JPT][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6993217	0.96[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs7001593	0.96[CEU][hapmap];0.84[YRI][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7005990	0.82[ASW][hapmap];0.96[CEU][hapmap];0.89[GIH][hapmap];0.80[LWK][hapmap];0.85[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs7006193	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7007789	0.93[EUR][1000 genomes]
rs7014229	0.94[ASW][hapmap];0.96[CEU][hapmap];0.98[GIH][hapmap];0.81[LWK][hapmap];0.83[MEX][hapmap];0.94[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7018302	0.94[EUR][1000 genomes]
rs7815237	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7815361	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7841495	0.92[CEU][hapmap];0.93[EUR][1000 genomes]
rs7844978	0.91[EUR][1000 genomes]
rs9969437	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9969438	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9969441	0.96[CEU][hapmap];0.89[YRI][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9969528	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9969535	0.96[CEU][hapmap];0.86[GIH][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9969537	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9969557	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9969619	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9969646	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033589	chr8:2498609-3305100	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1018407	chr8:2724294-3305100	Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv915568	chr8:2725834-3291312	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1025408	chr8:2733604-3302447	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1025209	chr8:3067655-3754882	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1026643	chr8:3077210-3277827	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1026998	chr8:3102679-3593264	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv1034076	chr8:3168033-3989947	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv539351	chr8:3168033-3989947	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv1017164	chr8:3174168-4026811	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	nsv539352	chr8:3174168-4026811	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
12	nsv1018218	chr8:3180287-4089011	Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11775235	FBXO25	cis	parietal	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:3255200-3269800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr8:3255400-3269800	Weak transcription	Brain Anterior Caudate	brain
3	chr8:3255600-3269800	Weak transcription	Brain Hippocampus Middle	brain
4	chr8:3255600-3269800	Weak transcription	Brain Substantia Nigra	brain
5	chr8:3257000-3270000	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr8:3262600-3266600	Weak transcription	Fetal Heart	heart
7	chr8:3265200-3269800	Weak transcription	Brain Angular Gyrus	brain
8	chr8:3265800-3266000	Enhancers	Fetal Brain Male	brain

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