Variant report

Variant	rs11775273
Chromosome Location	chr8:121405333-121405334
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10098378	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10808510	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12674802	1.00[CEU][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16893983	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4269581	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4311691	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4392947	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4442180	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4567082	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4870729	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4871061	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56074613	0.93[AFR][1000 genomes]
rs6999683	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7838344	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9297617	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891420	chr8:121194900-121561369	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv891421	chr8:121292407-121653902	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1033386	chr8:121369943-121501239	Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121369600-121406200	Weak transcription	Left Ventricle	heart
2	chr8:121391200-121406600	Weak transcription	NHLF	lung
3	chr8:121391400-121407000	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr8:121396600-121407200	Weak transcription	HSMM	muscle
5	chr8:121396800-121416800	Weak transcription	Aorta	Aorta
6	chr8:121397000-121407000	Weak transcription	HSMMtube	muscle
7	chr8:121397000-121407200	Weak transcription	Fetal Heart	heart
8	chr8:121400800-121406400	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr8:121401200-121406600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr8:121401200-121410000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr8:121401400-121410400	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr8:121401600-121406600	Weak transcription	Placenta	Placenta
13	chr8:121402000-121456400	Weak transcription	Small Intestine	intestine
14	chr8:121402200-121415600	Weak transcription	Esophagus	oesophagus
15	chr8:121402200-121416200	Weak transcription	Stomach Mucosa	stomach
16	chr8:121402400-121405800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
17	chr8:121402400-121409200	Weak transcription	Right Ventricle	heart
18	chr8:121402400-121409600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr8:121402400-121409600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr8:121402600-121408600	Strong transcription	Fetal Thymus	thymus
21	chr8:121402800-121405400	Weak transcription	Adipose Nuclei	Adipose
22	chr8:121402800-121408000	Strong transcription	Duodenum Smooth Muscle	Duodenum
23	chr8:121402800-121408000	Strong transcription	Ovary	ovary
24	chr8:121402800-121408000	Strong transcription	Skeletal Muscle Female	skeletal muscle
25	chr8:121402800-121410000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr8:121403200-121405400	Strong transcription	Stomach Smooth Muscle	stomach
27	chr8:121403200-121405600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr8:121403200-121407200	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr8:121403200-121408200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr8:121403200-121412000	Strong transcription	Primary T cells from cord blood	blood
31	chr8:121403400-121405600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr8:121403400-121405800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr8:121403400-121407200	Weak transcription	GM12878-XiMat	blood
34	chr8:121403600-121405600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr8:121403600-121406000	Weak transcription	NH-A	brain
36	chr8:121403600-121407800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr8:121403600-121407800	Strong transcription	Fetal Lung	lung
38	chr8:121403600-121409600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr8:121403600-121410800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr8:121403600-121412400	Weak transcription	Fetal Brain Male	brain
41	chr8:121403800-121405600	Weak transcription	Dnd41	blood
42	chr8:121403800-121406000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr8:121403800-121406200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr8:121403800-121406200	Weak transcription	Fetal Muscle Trunk	muscle
45	chr8:121403800-121407000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr8:121403800-121407600	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr8:121403800-121410000	Weak transcription	Colon Smooth Muscle	Colon
48	chr8:121404000-121405600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
49	chr8:121404000-121405600	Weak transcription	K562	blood
50	chr8:121404000-121406400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links