Variant report

Variant	rs11775407
Chromosome Location	chr8:61331055-61331056
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF7L2	chr8:61330705-61331139	PANC-1	pancreas:	n/a	chr8:61330941-61330957 chr8:61330945-61330954
2	TCF7L2	chr8:61330750-61331126	HEK293	kidney:	n/a	chr8:61330941-61330957 chr8:61330945-61330954

Variant related genes	Relation type
ENSG00000251396	TF binding region

Extended variants
information (count: 61 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10091703	0.81[EUR][1000 genomes]
rs10100740	0.80[EUR][1000 genomes]
rs10101576	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10101714	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10110436	0.81[EUR][1000 genomes]
rs10504311	0.97[ASN][1000 genomes]
rs10957135	0.97[ASN][1000 genomes]
rs10957136	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10957137	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10957138	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10957140	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10957141	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10957143	0.81[EUR][1000 genomes]
rs10957146	0.80[EUR][1000 genomes]
rs11774500	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11778529	0.80[EUR][1000 genomes]
rs11778708	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11778888	0.80[EUR][1000 genomes]
rs11782178	0.81[EUR][1000 genomes]
rs11782463	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11784284	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11988528	0.80[EUR][1000 genomes]
rs12678694	0.80[EUR][1000 genomes]
rs12681841	0.80[EUR][1000 genomes]
rs13266707	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13267828	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13269925	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1480342	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2326556	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2326557	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28405386	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28495747	0.80[EUR][1000 genomes]
rs28542403	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28678079	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2875966	0.80[EUR][1000 genomes]
rs34523017	0.80[EUR][1000 genomes]
rs34775344	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35837434	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35853087	0.80[EUR][1000 genomes]
rs602724	0.80[EUR][1000 genomes]
rs603239	0.80[EUR][1000 genomes]
rs6471884	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs66983460	0.83[EUR][1000 genomes]
rs6987523	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6991529	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6993237	0.80[EUR][1000 genomes]
rs6995397	0.90[EUR][1000 genomes]
rs6996344	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6998294	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7017556	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7357376	0.80[EUR][1000 genomes]
rs7812421	0.83[EUR][1000 genomes]
rs7820349	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7822391	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7826226	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7832664	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7832964	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7842105	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9643524	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917756	chr8:60942299-61862796	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	esv3371465	chr8:61115030-61356658	Bivalent Enhancer Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11775407	RAB2A	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links