Variant report

Variant	rs11775758
Chromosome Location	chr8:107096741-107096742
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:107065574..107067380-chr8:107096296..107097895,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1025352	0.86[EUR][1000 genomes]
rs28532523	0.83[EUR][1000 genomes]
rs6469052	0.83[EUR][1000 genomes]
rs73698633	0.86[EUR][1000 genomes]
rs73698635	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv611842	chr8:107076421-107115482	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv891262	chr8:107076421-107209378	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv611843	chr8:107088426-107104545	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	esv2830191	chr8:107088426-107115482	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107090600-107099000	Weak transcription	Esophagus	oesophagus
2	chr8:107093800-107099000	Weak transcription	Gastric	stomach
3	chr8:107094600-107099000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr8:107095000-107097600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr8:107095600-107098800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:107095600-107099000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr8:107095600-107099200	Weak transcription	Fetal Lung	lung
8	chr8:107095800-107096800	Enhancers	Dnd41	blood
9	chr8:107095800-107097200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr8:107095800-107098000	Weak transcription	Stomach Mucosa	stomach
11	chr8:107095800-107098800	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr8:107095800-107098800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr8:107095800-107099000	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr8:107095800-107099000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr8:107095800-107099200	Weak transcription	Stomach Smooth Muscle	stomach
16	chr8:107096000-107097200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr8:107096000-107097200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr8:107096000-107097400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr8:107096000-107097800	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr8:107096000-107098600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr8:107096000-107098800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr8:107096000-107098800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr8:107096000-107098800	Weak transcription	Brain Substantia Nigra	brain
24	chr8:107096000-107098800	Weak transcription	NHEK	skin
25	chr8:107096000-107099000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr8:107096000-107099000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr8:107096200-107097200	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr8:107096200-107098000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr8:107096200-107098600	Weak transcription	HMEC	breast
30	chr8:107096200-107098800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr8:107096200-107098800	Weak transcription	Brain Hippocampus Middle	brain
32	chr8:107096200-107099000	Weak transcription	Fetal Kidney	kidney
33	chr8:107096400-107097200	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr8:107096400-107098600	Weak transcription	NHDF-Ad	bronchial
35	chr8:107096400-107098800	Weak transcription	Adipose Nuclei	Adipose
36	chr8:107096600-107098600	Weak transcription	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links