Variant report

Variant	rs11776982
Chromosome Location	chr8:131988562-131988563
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10956568	0.86[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs10956569	0.86[ASN][1000 genomes]
rs1157822	0.94[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs11775729	0.86[ASN][1000 genomes]
rs11776501	0.81[ASN][1000 genomes]
rs11776563	0.96[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs11776645	0.81[ASN][1000 genomes]
rs11776888	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11779286	0.92[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs11781972	0.81[ASN][1000 genomes]
rs11782471	0.81[ASN][1000 genomes]
rs11991124	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11995961	0.86[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs12678370	0.86[ASN][1000 genomes]
rs12678403	0.86[ASN][1000 genomes]
rs12682035	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13278083	0.81[ASN][1000 genomes]
rs16904391	0.94[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs16904392	0.94[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs16904393	0.84[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs16904394	0.86[ASN][1000 genomes]
rs2026755	0.81[ASN][1000 genomes]
rs35123544	0.86[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs59232626	0.81[ASN][1000 genomes]
rs67683764	0.84[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs6980820	0.82[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs6986982	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7461448	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7465434	0.81[ASN][1000 genomes]
rs7824237	0.81[ASN][1000 genomes]
rs7840509	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030881	chr8:131801472-132654822	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1028579	chr8:131909872-132497149	Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1026579	chr8:131922531-132695045	Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2761471	chr8:131963290-132281905	Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:131972800-131990200	Weak transcription	Brain Cingulate Gyrus	brain
2	chr8:131982400-131989000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr8:131986000-131988800	Enhancers	Fetal Heart	heart
4	chr8:131988200-131988600	Enhancers	Right Atrium	heart

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