Variant report

Variant	rs11777176
Chromosome Location	chr8:60176329-60176330
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10107159	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10957083	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12674492	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12675344	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4317557	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7003844	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7821794	0.80[ASN][1000 genomes]
rs7830626	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7839518	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9643509	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831328	chr8:60062971-60288276	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1029441	chr8:60099776-60539141	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv539629	chr8:60099776-60539141	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv831329	chr8:60162977-60356031	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11777176	RP11-25K19.1	cis	Heart Left Ventricle	GTEx
rs11777176	TOX	cis	Heart Left Ventricle	GTEx

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60173000-60177400	Enhancers	Primary B cells from peripheral blood	blood
2	chr8:60173200-60176600	Enhancers	Primary B cells from cord blood	blood
3	chr8:60173200-60177000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr8:60173200-60179800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr8:60173800-60176600	Enhancers	Primary hematopoietic stem cells	blood
6	chr8:60174400-60176400	Weak transcription	Fetal Brain Male	brain
7	chr8:60174400-60177400	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr8:60174800-60178400	Weak transcription	Hela-S3	cervix
9	chr8:60175000-60176400	Weak transcription	HUVEC	blood vessel
10	chr8:60175600-60176800	Enhancers	Fetal Kidney	kidney
11	chr8:60175800-60176800	Enhancers	Pancreatic Islets	Pancreatic Islet
12	chr8:60175800-60177000	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr8:60175800-60177200	Enhancers	Colon Smooth Muscle	Colon
14	chr8:60176200-60176600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr8:60176200-60177200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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