Variant report

Variant	rs11777354
Chromosome Location	chr8:131163760-131163761
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11774131	0.87[EUR][1000 genomes]
rs11776863	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11778454	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11779191	0.85[EUR][1000 genomes]
rs11781851	0.83[EUR][1000 genomes]
rs11782152	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11782883	0.85[EUR][1000 genomes]
rs11783860	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11783940	0.87[EUR][1000 genomes]
rs11787251	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28380096	0.85[EUR][1000 genomes]
rs4319146	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4639572	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6989965	0.84[EUR][1000 genomes]
rs7003568	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7008180	0.87[EUR][1000 genomes]
rs72722310	0.87[EUR][1000 genomes]
rs72722316	0.85[EUR][1000 genomes]
rs72722318	0.84[EUR][1000 genomes]
rs72722323	0.84[EUR][1000 genomes]
rs72722325	0.85[EUR][1000 genomes]
rs72722339	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72722344	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72722347	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72722349	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72722355	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs752716	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869334	chr8:131025093-131651487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv915580	chr8:131025093-131667578	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv465810	chr8:131039109-131331012	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv612234	chr8:131039109-131331012	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv533085	chr8:131042781-131755007	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
6	nsv831461	chr8:131159819-131302900	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:131076200-131170600	Weak transcription	Small Intestine	intestine
2	chr8:131116000-131193800	Strong transcription	Primary neutrophils fromperipheralblood	blood
3	chr8:131128800-131186800	Weak transcription	Fetal Brain Male	brain
4	chr8:131130400-131180200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr8:131138800-131164600	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr8:131140000-131169200	Weak transcription	Brain Angular Gyrus	brain
7	chr8:131141400-131164400	Weak transcription	Primary hematopoietic stem cells	blood
8	chr8:131146600-131178800	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr8:131146600-131206000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr8:131147200-131163800	Weak transcription	Colon Smooth Muscle	Colon
11	chr8:131147400-131194400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr8:131147600-131170400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr8:131147600-131199800	Weak transcription	Pancreas	Pancrea
14	chr8:131148000-131183800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr8:131148000-131194400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr8:131148400-131169800	Weak transcription	K562	blood
17	chr8:131148600-131164800	Weak transcription	Brain Anterior Caudate	brain
18	chr8:131148600-131169800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr8:131148600-131170200	Weak transcription	Fetal Intestine Small	intestine
20	chr8:131149000-131168000	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr8:131149000-131170600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr8:131149000-131178400	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr8:131149200-131163800	Weak transcription	Brain Hippocampus Middle	brain
24	chr8:131149200-131164000	Weak transcription	Brain Substantia Nigra	brain
25	chr8:131149200-131168600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr8:131149200-131172200	Weak transcription	HepG2	liver
27	chr8:131149200-131178600	Weak transcription	Brain Cingulate Gyrus	brain
28	chr8:131149200-131184400	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr8:131149400-131163800	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr8:131149400-131163800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr8:131149400-131169200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr8:131149400-131169600	Weak transcription	Rectal Smooth Muscle	rectum
33	chr8:131149600-131169400	Weak transcription	Thymus	Thymus
34	chr8:131150200-131168600	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr8:131150800-131169600	Weak transcription	Brain Germinal Matrix	brain
36	chr8:131152000-131181000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr8:131152200-131182200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr8:131152800-131193600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr8:131154400-131164600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr8:131155000-131168600	Weak transcription	Esophagus	oesophagus
41	chr8:131155200-131167600	Weak transcription	Gastric	stomach
42	chr8:131155200-131169600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr8:131155200-131169800	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr8:131155200-131206800	Weak transcription	Psoas Muscle	Psoas
45	chr8:131155400-131167600	Weak transcription	Left Ventricle	heart
46	chr8:131155600-131177600	Strong transcription	A549	lung
47	chr8:131156200-131165400	Strong transcription	Primary T cells from cord blood	blood
48	chr8:131156200-131194800	Weak transcription	Fetal Kidney	kidney
49	chr8:131156600-131164800	Strong transcription	Primary monocytes fromperipheralblood	blood
50	chr8:131156600-131194200	Weak transcription	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links