Variant report

Variant	rs1177740
Chromosome Location	chr13:93423509-93423510
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12583136	0.85[CHB][hapmap];0.91[JPT][hapmap]
rs12583849	0.85[CHB][hapmap];0.92[JPT][hapmap]
rs12876755	0.85[CHB][hapmap];0.92[JPT][hapmap]
rs1570971	0.90[ASN][1000 genomes]
rs17188557	0.85[CHB][hapmap];0.91[JPT][hapmap]
rs17188564	0.85[CHB][hapmap];0.92[JPT][hapmap]
rs17267292	0.85[CHB][hapmap];0.91[JPT][hapmap]
rs1933183	0.85[CHB][hapmap];0.92[JPT][hapmap]
rs1933184	0.85[CHB][hapmap];0.91[JPT][hapmap]
rs1933185	0.85[CHB][hapmap]
rs9516130	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv456072	chr13:93419362-93506864	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv562746	chr13:93419362-93506864	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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