Variant report

Variant	rs11777464
Chromosome Location	chr8:64800605-64800606
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12674936	0.97[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12675356	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16919009	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17217512	0.90[AMR][1000 genomes]
rs35972236	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7829551	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8357	chr8:64783560-64852075	Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:64799600-64801400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr8:64799800-64801600	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr8:64800000-64802000	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr8:64800400-64800800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr8:64800400-64801600	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr8:64800400-64801600	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr8:64800400-64801800	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr8:64800400-64802200	Enhancers	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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