Variant report

Variant	rs11777611
Chromosome Location	chr8:11554261-11554262
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10088151	0.91[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11781500	0.89[ASN][1000 genomes]
rs2409813	0.84[ASN][1000 genomes]
rs28473684	0.89[ASN][1000 genomes]
rs28530664	0.87[ASN][1000 genomes]
rs34888744	0.93[ASN][1000 genomes]
rs35813172	0.93[ASN][1000 genomes]
rs4269498	1.00[CHB][hapmap];0.80[JPT][hapmap];0.91[ASN][1000 genomes]
rs4489290	0.92[ASN][1000 genomes]
rs61277615	0.83[ASN][1000 genomes]
rs62489319	0.93[ASN][1000 genomes]
rs6990313	1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs7003677	0.92[CEU][hapmap]
rs73203483	0.94[ASN][1000 genomes]
rs7817412	0.89[ASN][1000 genomes]
rs7837066	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529399	chr8:10970091-11805960	Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
2	nsv1017865	chr8:11377795-11579954	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1018978	chr8:11438267-11858466	Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv917963	chr8:11540723-11751798	Genic enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv1027378	chr8:11541739-11858466	Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:11551400-11557800	Weak transcription	Pancreas	Pancrea
2	chr8:11553200-11555400	Bivalent Enhancer	Fetal Intestine Small	intestine
3	chr8:11553400-11554400	Weak transcription	Gastric	stomach
4	chr8:11553400-11554400	Weak transcription	Left Ventricle	heart
5	chr8:11553400-11554400	Weak transcription	Ovary	ovary
6	chr8:11553400-11554400	Weak transcription	Right Ventricle	heart
7	chr8:11553600-11554400	Bivalent Enhancer	HepG2	liver
8	chr8:11554000-11555000	Enhancers	Right Atrium	heart
9	chr8:11554200-11554400	Flanking Bivalent TSS/Enh	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr8:11554200-11554400	Flanking Active TSS	Fetal Heart	heart
11	chr8:11554200-11554600	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
12	chr8:11554200-11554600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
13	chr8:11554200-11554600	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr8:11554200-11555000	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr8:11554200-11555600	Bivalent Enhancer	Fetal Intestine Large	intestine
16	chr8:11554200-11557000	Bivalent Enhancer	Duodenum Mucosa	Duodenum

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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