Variant report

Variant	rs11777678
Chromosome Location	chr8:122207075-122207076
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:122192539..122194732-chr8:122205556..122207938,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10505395	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10956007	0.87[YRI][hapmap]
rs10956008	0.94[YRI][hapmap];0.82[AFR][1000 genomes]
rs10956009	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11777604	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12677043	0.82[AFR][1000 genomes]
rs1504641	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1504642	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1504643	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1504644	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1504645	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1587833	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16894831	0.94[YRI][hapmap];0.82[AFR][1000 genomes]
rs1827656	0.87[YRI][hapmap]
rs35731592	0.80[ASN][1000 genomes]
rs3936220	0.93[YRI][hapmap];0.82[AFR][1000 genomes]
rs56134460	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59140593	0.82[AFR][1000 genomes]
rs60833458	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs66469340	0.82[AFR][1000 genomes]
rs66508469	0.82[AFR][1000 genomes]
rs66756311	0.82[AFR][1000 genomes]
rs6980921	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72713417	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72713422	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7463285	0.94[YRI][hapmap];0.82[AFR][1000 genomes]
rs7841368	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891424	chr8:121873345-122393258	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv1844734	chr8:121928250-122283585	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv3330574	chr8:122039099-122386130	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv891426	chr8:122078334-122393258	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1021839	chr8:122173682-122240824	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:122203800-122213400	Weak transcription	Fetal Lung	lung

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