Variant report

Variant	rs11777754
Chromosome Location	chr8:104215583-104215584
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr8:104215462-104215585	MCF10A-Er-Src	breast:	n/a	n/a
2	CEBPB	chr8:104215575-104215921	IMR90	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:104212684..104216362-chr8:104218392..104222186,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000247081	TF binding region
BAALC	TF binding region
ENSG00000164929	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831413	chr8:104085141-104269789	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
2	nsv429931	chr8:104097396-104878014	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
3	esv1848810	chr8:104128496-104369288	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
4	esv1844303	chr8:104128696-104369090	Genic enhancers Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
5	esv14660	chr8:104182119-104245529	ZNF genes & repeats Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv1015965	chr8:104192086-104361108	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:104192800-104219200	Weak transcription	Aorta	Aorta
2	chr8:104193400-104220000	Weak transcription	Brain Hippocampus Middle	brain
3	chr8:104193600-104220200	Weak transcription	Brain Anterior Caudate	brain
4	chr8:104194200-104217600	Weak transcription	Fetal Brain Female	brain
5	chr8:104197200-104218600	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr8:104202400-104222200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr8:104205200-104220200	Weak transcription	Brain Cingulate Gyrus	brain
8	chr8:104207600-104220200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr8:104209400-104225400	Weak transcription	Brain Substantia Nigra	brain
10	chr8:104211000-104219200	Strong transcription	Primary hematopoietic stem cells	blood
11	chr8:104211400-104215600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr8:104212200-104215600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr8:104213000-104215600	Strong transcription	Brain Angular Gyrus	brain
14	chr8:104213600-104222200	Weak transcription	Gastric	stomach
15	chr8:104214200-104216800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr8:104214600-104219000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr8:104214800-104215600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr8:104215000-104217600	Enhancers	Muscle Satellite Cultured Cells	--
19	chr8:104215000-104217600	Enhancers	Osteobl	bone
20	chr8:104215000-104222800	Enhancers	NHDF-Ad	bronchial
21	chr8:104215000-104224200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr8:104215200-104215600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr8:104215200-104215600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr8:104215200-104215600	Enhancers	HMEC	breast
25	chr8:104215200-104215600	Enhancers	NH-A	brain
26	chr8:104215200-104216800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr8:104215200-104217800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr8:104215200-104218400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr8:104215400-104215600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr8:104215400-104215600	Enhancers	NHLF	lung
31	chr8:104215400-104216400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr8:104215400-104216800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr8:104215400-104217000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr8:104215400-104218000	Weak transcription	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links