Variant report
| Variant | rs1177797 |
|---|---|
| Chromosome Location | chr1:192203048-192203049 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs1124172 | 0.95[MEX][hapmap] |
| rs1175121 | 0.80[AMR][1000 genomes] |
| rs1175123 | 0.82[AMR][1000 genomes] |
| rs1175127 | 0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1175128 | 0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1175129 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1175132 | 0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1175134 | 0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs1175145 | 0.81[CEU][hapmap];0.90[MEX][hapmap];0.81[TSI][hapmap] |
| rs1175147 | 0.89[AMR][1000 genomes] |
| rs1175148 | 0.88[AMR][1000 genomes] |
| rs1175154 | 0.89[AMR][1000 genomes] |
| rs1175155 | 0.89[AMR][1000 genomes] |
| rs1175156 | 0.89[AMR][1000 genomes] |
| rs1175158 | 0.88[AMR][1000 genomes] |
| rs12124127 | 0.95[MEX][hapmap] |
| rs1339129 | 0.81[CEU][hapmap];0.95[MEX][hapmap];0.83[TSI][hapmap] |
| rs1572729 | 0.95[MEX][hapmap] |
| rs2249061 | 0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2249062 | 0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2369658 | 0.82[AMR][1000 genomes] |
| rs4495675 | 0.88[JPT][hapmap] |
| rs6428094 | 0.95[MEX][hapmap];0.83[TSI][hapmap] |
| rs6428095 | 0.81[CEU][hapmap] |
| rs6659110 | 0.82[CEU][hapmap] |
| rs6663865 | 0.85[GIH][hapmap];0.95[MEX][hapmap] |
| rs7526348 | 0.88[JPT][hapmap] |
| rs7528947 | 0.82[CEU][hapmap] |
| rs7532216 | 0.95[MEX][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv430047 | chr1:191811587-192203678 | Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs1177797 | OR6C1 | trans | cerebellum | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:192202400-192203400 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |
