Variant report

Variant	rs11778114
Chromosome Location	chr8:122739469-122739470
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10105831	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs1457168	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62525276	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033501	chr8:122436332-122758651	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1030713	chr8:122714959-122780805	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:122735600-122740000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
2	chr8:122735600-122740200	Enhancers	Primary T helper cells PMA-I stimulated	--
3	chr8:122735600-122740400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr8:122735800-122740000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr8:122736200-122739800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr8:122736200-122740000	Enhancers	Primary T cells fromperipheralblood	blood
7	chr8:122736200-122740600	Enhancers	Dnd41	blood
8	chr8:122736400-122740000	Enhancers	Primary T cells from cord blood	blood
9	chr8:122736400-122740600	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr8:122736600-122740000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr8:122736800-122740000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr8:122736800-122740000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr8:122737200-122740600	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr8:122737400-122740000	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr8:122737800-122740000	Enhancers	A549	lung
16	chr8:122738200-122739800	Enhancers	Thymus	Thymus
17	chr8:122738800-122739800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr8:122739000-122739800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
19	chr8:122739200-122739600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr8:122739200-122741600	Weak transcription	NHEK	skin
21	chr8:122739400-122739800	Enhancers	Fetal Muscle Trunk	muscle

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