Variant report

Variant	rs11779347
Chromosome Location	chr8:95778671-95778672
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:95772422..95774937-chr8:95778657..95780435,3	K562	blood:
2	chr8:95777188..95778699-chr8:95834646..95837037,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164941	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10096985	0.87[EUR][1000 genomes]
rs10112090	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11998371	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.88[EUR][1000 genomes]
rs12056667	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.84[EUR][1000 genomes]
rs12114686	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28465097	0.87[EUR][1000 genomes]
rs28565298	0.92[EUR][1000 genomes]
rs3924088	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4078348	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs4335102	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4371975	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4524755	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4529434	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4574819	0.99[ASN][1000 genomes]
rs4734287	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4735316	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6471485	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7016709	0.87[EUR][1000 genomes]
rs7017015	0.95[CEU][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs7830795	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7830822	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv532338	chr8:95296118-95971825	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95732800-95780400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr8:95733000-95784400	Weak transcription	Esophagus	oesophagus
3	chr8:95733000-95803800	Weak transcription	Psoas Muscle	Psoas
4	chr8:95733000-95805200	Weak transcription	Colonic Mucosa	Colon
5	chr8:95733200-95805000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr8:95733400-95783800	Weak transcription	Gastric	stomach
7	chr8:95733400-95784800	Weak transcription	Small Intestine	intestine
8	chr8:95733600-95779400	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr8:95733600-95782600	Weak transcription	Brain Substantia Nigra	brain
10	chr8:95733600-95809400	Weak transcription	Rectal Smooth Muscle	rectum
11	chr8:95733800-95783600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr8:95733800-95806400	Weak transcription	Fetal Brain Male	brain
13	chr8:95734000-95783600	Weak transcription	Fetal Kidney	kidney
14	chr8:95734200-95784600	Weak transcription	Brain Angular Gyrus	brain
15	chr8:95735400-95787800	Weak transcription	Hela-S3	cervix
16	chr8:95740800-95782200	Weak transcription	Primary B cells from peripheral blood	blood
17	chr8:95740800-95782800	Weak transcription	Brain Cingulate Gyrus	brain
18	chr8:95740800-95799000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr8:95741200-95778800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr8:95741200-95783600	Weak transcription	Colon Smooth Muscle	Colon
21	chr8:95741200-95783800	Weak transcription	HMEC	breast
22	chr8:95744000-95790800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr8:95745000-95782200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr8:95752400-95781800	Weak transcription	NH-A	brain
25	chr8:95752400-95809200	Weak transcription	NHLF	lung
26	chr8:95752600-95779400	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr8:95752600-95780200	Weak transcription	HSMM	muscle
28	chr8:95752600-95784200	Weak transcription	A549	lung
29	chr8:95752600-95793400	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr8:95752600-95805600	Weak transcription	NHEK	skin
31	chr8:95753600-95791200	Weak transcription	Primary B cells from cord blood	blood
32	chr8:95757800-95783200	Weak transcription	GM12878-XiMat	blood
33	chr8:95761000-95782800	Weak transcription	Thymus	Thymus
34	chr8:95761000-95783800	Weak transcription	HepG2	liver
35	chr8:95761800-95782800	Weak transcription	Lung	lung
36	chr8:95761800-95784600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr8:95761800-95785400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr8:95761800-95803600	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr8:95762000-95778800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr8:95762000-95783800	Weak transcription	Aorta	Aorta
41	chr8:95762200-95782800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr8:95762200-95793600	Weak transcription	Stomach Mucosa	stomach
43	chr8:95766200-95788400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr8:95767600-95795000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr8:95767800-95779000	Weak transcription	Fetal Brain Female	brain
46	chr8:95769000-95778800	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr8:95769400-95780200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr8:95770400-95779200	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr8:95770400-95783800	Weak transcription	Brain Germinal Matrix	brain
50	chr8:95770800-95779000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links