Variant report

Variant	rs117797798
Chromosome Location	chr13:97772908-97772909
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:97768370..97770403-chr13:97772798..97774426,2	MCF-7	breast:
2	chr13:97770807..97773775-chr13:97872906..97876647,5	MCF-7	breast:
3	chr13:97772203..97773907-chr13:97847803..97849794,2	K562	blood:

Variant related genes	Relation type
ENSG00000139793	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832693	chr13:97594845-97777481	Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1053686	chr13:97771607-97802296	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97762800-97773600	Weak transcription	K562	blood
2	chr13:97766800-97778200	Weak transcription	Esophagus	oesophagus
3	chr13:97767800-97776600	Weak transcription	Gastric	stomach
4	chr13:97767800-97777200	Weak transcription	Fetal Kidney	kidney
5	chr13:97768000-97773000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr13:97768000-97773000	Weak transcription	A549	lung
7	chr13:97768000-97777000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr13:97768600-97774000	Weak transcription	Placenta	Placenta
9	chr13:97768800-97775600	Weak transcription	Lung	lung
10	chr13:97768800-97776200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr13:97769000-97778400	Weak transcription	Right Atrium	heart
12	chr13:97769200-97774800	Weak transcription	Brain Hippocampus Middle	brain
13	chr13:97769600-97773000	Weak transcription	HSMM	muscle
14	chr13:97769600-97774200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr13:97770000-97774800	Weak transcription	Stomach Mucosa	stomach
16	chr13:97770200-97773800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr13:97770200-97774000	Weak transcription	Right Ventricle	heart
18	chr13:97770200-97775000	Weak transcription	Aorta	Aorta
19	chr13:97770200-97775000	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr13:97770200-97775000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr13:97770200-97776600	Weak transcription	Fetal Stomach	stomach
22	chr13:97770200-97777200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr13:97770400-97774000	Weak transcription	Fetal Heart	heart
24	chr13:97770400-97777000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr13:97770600-97774600	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr13:97770800-97774000	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr13:97770800-97775000	Weak transcription	Ovary	ovary
28	chr13:97770800-97775000	Weak transcription	Stomach Smooth Muscle	stomach
29	chr13:97770800-97776200	Weak transcription	Left Ventricle	heart
30	chr13:97770800-97777400	Weak transcription	Psoas Muscle	Psoas
31	chr13:97771400-97773200	Enhancers	Colon Smooth Muscle	Colon
32	chr13:97771400-97775800	Enhancers	NHEK	skin
33	chr13:97771400-97777800	Enhancers	HMEC	breast
34	chr13:97771400-97779600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr13:97771600-97773600	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr13:97771600-97775600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr13:97771800-97774200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr13:97771800-97775800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr13:97772000-97775800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr13:97772200-97773000	Enhancers	Brain Angular Gyrus	brain
41	chr13:97772200-97773000	Enhancers	Brain Inferior Temporal Lobe	brain
42	chr13:97772200-97773200	Enhancers	Breast Myoepithelial Primary Cells	Breast
43	chr13:97772200-97773200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr13:97772200-97774000	Weak transcription	Fetal Intestine Large	intestine
45	chr13:97772400-97774400	Enhancers	Muscle Satellite Cultured Cells	--
46	chr13:97772400-97775400	Enhancers	Placenta Amnion	Placenta Amnion
47	chr13:97772400-97775800	Enhancers	Osteobl	bone
48	chr13:97772400-97778800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr13:97772600-97773000	Enhancers	Brain Cingulate Gyrus	brain
50	chr13:97772600-97774800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links