Variant report

Variant	rs11780178
Chromosome Location	chr8:39728437-39728438
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12675176	1.00[ASN][1000 genomes]
rs12675538	0.92[ASN][1000 genomes]
rs12676988	0.88[ASN][1000 genomes]
rs12677195	0.84[ASN][1000 genomes]
rs56013414	0.92[ASN][1000 genomes]
rs56099501	0.92[ASN][1000 genomes]
rs56220340	1.00[ASN][1000 genomes]
rs56333905	1.00[ASN][1000 genomes]
rs56402110	0.92[ASN][1000 genomes]
rs62511257	0.98[ASN][1000 genomes]
rs62511259	1.00[ASN][1000 genomes]
rs62512561	1.00[ASN][1000 genomes]
rs62512566	0.97[ASN][1000 genomes]
rs62512567	0.92[ASN][1000 genomes]
rs62512568	0.92[ASN][1000 genomes]
rs62512569	0.92[ASN][1000 genomes]
rs62512570	0.91[ASN][1000 genomes]
rs62512574	0.86[ASN][1000 genomes]
rs62512629	0.86[ASN][1000 genomes]
rs62512630	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv539555	chr8:39683857-40673606	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:39727600-39728600	Enhancers	Spleen	Spleen
2	chr8:39728400-39730600	Enhancers	HUVEC	blood vessel

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links