Variant report

Variant	rs11781147
Chromosome Location	chr8:124969725-124969726
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:124968963..124971548-chr8:124973335..124975259,2	MCF-7	breast:
2	chr8:124968346..124974202-chr8:124988227..124995035,8	MCF-7	breast:
3	chr8:124779816..124782654-chr8:124968951..124972407,3	MCF-7	breast:
4	chr8:124552529..124555386-chr8:124969535..124971577,2	MCF-7	breast:
5	chr8:124962163..124964055-chr8:124969703..124971275,2	K562	blood:
6	chr8:124969317..124972187-chr8:124973160..124976482,5	MCF-7	breast:
7	chr8:124969491..124970394-chr8:125018602..125019468,2	MCF-7	breast:
8	chr8:124969536..124971932-chr8:124978093..124981369,4	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs16899060	1.00[ASN][1000 genomes]
rs17269707	1.00[ASN][1000 genomes]
rs34690659	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36045120	0.85[EUR][1000 genomes]
rs59878612	1.00[ASN][1000 genomes]
rs62518686	1.00[ASN][1000 genomes]
rs62518691	1.00[ASN][1000 genomes]
rs62518692	1.00[ASN][1000 genomes]
rs62518732	1.00[ASN][1000 genomes]
rs72714685	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033617	chr8:124895516-125012783	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1035035	chr8:124895516-125020472	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv612141	chr8:124895809-125006490	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv612142	chr8:124896389-125006490	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv612143	chr8:124927711-124988267	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1020971	chr8:124939571-124973679	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124962800-124969800	Weak transcription	Gastric	stomach
2	chr8:124964400-124970200	Genic enhancers	Stomach Mucosa	stomach
3	chr8:124967200-124987000	Weak transcription	Fetal Stomach	stomach
4	chr8:124967800-124970200	Enhancers	A549	lung
5	chr8:124967800-124970400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr8:124968000-124971000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr8:124969200-124970600	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr8:124969400-124970800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr8:124969600-124970400	Enhancers	Fetal Kidney	kidney
10	chr8:124969600-124970600	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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