Variant report

Variant	rs1178130
Chromosome Location	chr7:18768788-18768789
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11764116	0.90[CEU][hapmap];0.84[GIH][hapmap];0.82[MEX][hapmap];0.87[TSI][hapmap]
rs1178121	0.91[CEU][hapmap];0.82[JPT][hapmap]
rs1178122	0.95[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1178123	0.95[CEU][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes]
rs1178124	0.95[CEU][hapmap];0.82[JPT][hapmap];0.84[EUR][1000 genomes]
rs1178127	0.95[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1178128	0.95[CEU][hapmap];0.82[JPT][hapmap];0.90[EUR][1000 genomes]
rs1178129	0.95[CEU][hapmap];0.82[JPT][hapmap];0.90[EUR][1000 genomes]
rs1178131	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1178132	0.95[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.87[TSI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1178133	0.95[CEU][hapmap];0.86[JPT][hapmap];0.87[EUR][1000 genomes]
rs1178142	0.95[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1178143	0.85[ASN][1000 genomes]
rs1178148	0.90[CEU][hapmap]
rs1178150	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1178152	0.85[EUR][1000 genomes]
rs1178153	0.85[EUR][1000 genomes]
rs1178155	0.95[CEU][hapmap]
rs1178156	1.00[CEU][hapmap];0.85[GIH][hapmap];0.81[MEX][hapmap];0.87[TSI][hapmap];0.87[EUR][1000 genomes]
rs1178162	0.95[CEU][hapmap];0.82[GIH][hapmap];0.82[MEX][hapmap];0.97[TSI][hapmap];0.82[EUR][1000 genomes]
rs1178164	0.95[CEU][hapmap];0.82[GIH][hapmap];0.82[MEX][hapmap];0.94[TSI][hapmap];0.85[EUR][1000 genomes]
rs1178165	0.95[CEU][hapmap];0.84[EUR][1000 genomes]
rs1178166	0.85[EUR][1000 genomes]
rs1178171	0.95[CEU][hapmap];0.85[EUR][1000 genomes]
rs1178172	0.95[CEU][hapmap];0.85[EUR][1000 genomes]
rs1178174	0.95[CEU][hapmap];0.85[EUR][1000 genomes]
rs1178176	0.95[CEU][hapmap];0.90[GIH][hapmap];0.82[MEX][hapmap];0.84[MKK][hapmap];0.97[TSI][hapmap];0.85[EUR][1000 genomes]
rs1178179	0.95[CEU][hapmap];0.82[MEX][hapmap];0.97[TSI][hapmap];0.85[EUR][1000 genomes]
rs212672	0.86[CEU][hapmap]
rs212674	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs727851	0.90[CEU][hapmap]
rs894978	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755157	chr7:18337660-18805860	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv830917	chr7:18612436-18817712	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv531368	chr7:18677922-18836920	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv498112	chr7:18677922-18991946	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv887813	chr7:18720135-18995552	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv606359	chr7:18751998-18787563	ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv887814	chr7:18751998-18886177	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv2757218	chr7:18767714-18801340	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv2759516	chr7:18767714-18801340	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18699600-18776000	Weak transcription	Aorta	Aorta
2	chr7:18726200-18790200	Weak transcription	Primary B cells from cord blood	blood
3	chr7:18748000-18788600	Weak transcription	Left Ventricle	heart
4	chr7:18765200-18810600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr7:18766400-18768800	Weak transcription	Fetal Brain Female	brain
6	chr7:18767800-18769600	Weak transcription	Brain Inferior Temporal Lobe	brain

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