Variant report

Variant	rs11783294
Chromosome Location	chr8:99357812-99357813
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:99304773..99308410-chr8:99356303..99359323,3	MCF-7	breast:
2	chr8:99344297..99345235-chr8:99357703..99358227,2	MCF-7	breast:
3	chr8:99347365..99349416-chr8:99356232..99359153,2	K562	blood:
4	chr8:99356606..99360601-chr8:99368413..99371833,4	MCF-7	breast:
5	chr8:99351707..99353474-chr8:99355817..99358709,2	MCF-7	breast:
6	chr8:99348334..99350137-chr8:99356726..99359108,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000104361	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10096079	1.00[CHB][hapmap];0.90[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10955165	0.83[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11774385	0.83[CEU][hapmap];1.00[CHB][hapmap];0.87[MEX][hapmap];0.97[TSI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11775325	0.86[CEU][hapmap];1.00[CHB][hapmap];0.81[MEX][hapmap];0.97[TSI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11775839	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11777508	0.90[EUR][1000 genomes]
rs11780409	1.00[CHB][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11782450	1.00[ASN][1000 genomes]
rs11784029	0.83[CEU][hapmap];1.00[CHB][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11785622	0.82[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11787268	0.83[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17288913	0.83[CEU][hapmap];0.94[TSI][hapmap];0.86[EUR][1000 genomes]
rs17289367	0.83[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17360909	0.82[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55812318	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62524219	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62524220	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62524223	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6987554	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72664861	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7844358	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032904	chr8:98756076-99476925	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv539687	chr8:98756076-99476925	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
3	nsv831406	chr8:99290745-99482076	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv891217	chr8:99346537-99391285	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv17785	chr8:99357214-99359367	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:99354200-99368200	Weak transcription	NHDF-Ad	bronchial
2	chr8:99354600-99369000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr8:99356000-99361400	Weak transcription	Ovary	ovary

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